SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G64680 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:24036071-24037062 FORWARD LENGTH=250 | SoyBase | E_val: 2.00E-131 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0016556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA modification | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1JDK4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDK4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000248497F | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: hypothetical protein ACCM5_01849 n=1 Tax=Acaryochloris sp. CCMEE 5410 RepID=UPI000248497F | SoyBase | E_val: 4.00E-61 | ISS |
|
Glyma02g09680 not represented in the dataset |
Glyma02g09680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g088200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g09680.4 sequence type=transcript gene model=Glyma02g09680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTCATAACCACACAAAGGCACAAGCCAACGTAACCATATCTCATCCTCGTCCATTCTCTCTCTGATATGAGGTAAACACCACCAGAAAACCACCCTCTGAGTTTCAAAAATCTTTTCTTCTAATCACCATTTTCAAATCAAGAAATTAAGCTAGCTTTCTTTCAACTCCCTTGGGAGCTTTAGGAGGCTTGGGTGGCGCAACTCATCACCTCTTTTTCTCCTCTCTTCGCATAGTTCAACTTGAGTTAATTCAGAAACTCGGCAGTGGGAATTGATGGTAGCTCTGAGCTTGCAGGGTGTGCAGGCAAGTCCTGCCCAACCCCAATGCCAACGCCCATCATCACGTGGTGGAAGAGCAGCTGGAGTCATCAGAATTCGGTGTGGGATAGCTGAGCCATCTGGTGAACCTGCTCCTTTAGGACAAAAGACACGGTACAATGATGGCATTTTTGAGAAGGCCTTCATGACTCTCTTTGCGCGTAAGATGGAGAAATTTGCTGATCCACCAGCACCAGCAGGAAAAGCCAGAGAGAATAAGGGTTGGTGGGATTGGGGTTATGACTATGAGAGTTTCGTGGATGTATCAAGGAGAGTAATGCAGCGTAGGTCTCGTATCCAGCAACAACAAGTGGTTCGGGAGGTTCTCCTGTCTATGCTTCCTCCAGGTGCGCCTGCCCAGTTCCGGAAATTATTTCCGCCAACAAAATGGGCTGCAGAGTTTAATGCTGCTTTGACAGTGCCTTTCTTCGACTGGTTAGTTGGGCCATCTGAGGTTATGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATAAAGAAGTGCAGGTACCTGGAGAATAGTGGCTGTGTTGGAATGTGTGTCAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAATTTTGAAGACATGAGTTGTGATATGGTGTATGGCCAAGTCCCACCTACATTTGAAGAAGACCCTGTTTCAAAACAAGCTTGTTATGCGAATATATGTTCTATGGCAAAACCAAGCTCTAGTGTGTGTCATAAACTACAGGCATGAGAAGGCATTCCTTTCTAGTGTCTAGTAAGCTTCTATTTCGACCTGAGGTGCTCTTACCGGTCTAGCTTCAGAAAATTTCATTTTTCACGCGTGTAATTATACCAGCCTTGTTAGGCTTTTACTTCTTTCATAGAGTCATTACATTCACAAATGAGAGGGCATTGTCTACAAATACTTCATGTAAATTTGTAATTATAGTGTCAAATATCAGTATTGCTAGATTGTACAATTTTTTTGCCAAAACTAACACCCAAACTACGTGGCTATATTAGTTAATTAAACATCTATATTGCACTCTTTTTTCTACTAAAAT
>Glyma02g09680.3 sequence type=CDS gene model=Glyma02g09680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTAGCTCTGAGCTTGCAGGGTGTGCAGGCAAGTCCTGCCCAACCCCAATGCCAACGCCCATCATCACGTGGTGGAAGAGCAGCTGGAGTCATCAGAATTCGGTGTGGGATAGCTGAGCCATCTGGTGAACCTGCTCCTTTAGGACAAAAGACACGGTACAATGATGGCATTTTTGAGAAGGCCTTCATGACTCTCTTTGCGCGTAAGATGGAGAAATTTGCTGATCCACCAGCACCAGCAGGAAAAGCCAGAGAGAATAAGGGTTGGTGGGATTGGGGTTATGACTATGAGAGTTTCGTGGATGTATCAAGGAGAGTAATGCAGCGTAGGTCTCGTATCCAGCAACAACAAGTGGTTCGGGAGGTTCTCCTGTCTATGCTTCCTCCAGGTGCGCCTGCCCAGTTCCGGAAATTATTTCCGCCAACAAAATGGGCTGCAGAGTTTAATGCTGCTTTGACAGTGCCTTTCTTCGACTGGTTAGTTGGGCCATCTGAGGTTATGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATAAAGAAGTGCAGGTACCTGGAGAATAGTGGCTGTGTTGGAATGTGTGTCAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAATTTTGAAGACATGAGTTGTGATATGGTGTATGGCCAAGTCCCACCTACATTTGAAGAAGACCCTGTTTCAAAACAAGCTTGTTATGCGAATATATGTTCTATGGCAAAACCAAGCTCTAGTGTGTGTCATAAACTACAGGCATGA >Glyma02g09680.4 sequence type=CDS gene model=Glyma02g09680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTAGCTCTGAGCTTGCAGGGTGTGCAGGCAAGTCCTGCCCAACCCCAATGCCAACGCCCATCATCACGTGGTGGAAGAGCAGCTGGAGTCATCAGAATTCGGTGTGGGATAGCTGAGCCATCTGGTGAACCTGCTCCTTTAGGACAAAAGACACGGTACAATGATGGCATTTTTGAGAAGGCCTTCATGACTCTCTTTGCGCGTAAGATGGAGAAATTTGCTGATCCACCAGCACCAGCAGGAAAAGCCAGAGAGAATAAGGGTTGGTGGGATTGGGGTTATGACTATGAGAGTTTCGTGGATGTATCAAGGAGAGTAATGCAGCGTAGGTCTCGTATCCAGCAACAACAAGTGGTTCGGGAGGTTCTCCTGTCTATGCTTCCTCCAGGTGCGCCTGCCCAGTTCCGGAAATTATTTCCGCCAACAAAATGGGCTGCAGAGTTTAATGCTGCTTTGACAGTGCCTTTCTTCGACTGGTTAGTTGGGCCATCTGAGGTTATGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATAAAGAAGTGCAGGTACCTGGAGAATAGTGGCTGTGTTGGAATGTGTGTCAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAATTTTGAAGACATGAGTTGTGATATGGTGTATGGCCAAGTCCCACCTACATTTGAAGAAGACCCTGTTTCAAAACAAGCTTGTTATGCGAATATATGTTCTATGGCAAAACCAAGCTCTAGTGTGTGTCATAAACTACAGGCATGA
>Glyma02g09680.3 sequence type=predicted peptide gene model=Glyma02g09680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVALSLQGVQASPAQPQCQRPSSRGGRAAGVIRIRCGIAEPSGEPAPLGQKTRYNDGIFEKAFMTLFARKMEKFADPPAPAGKARENKGWWDWGYDYESFVDVSRRVMQRRSRIQQQQVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFDWLVGPSEVMEVEINGVKQKSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMTPNFEDMSCDMVYGQVPPTFEEDPVSKQACYANICSMAKPSSSVCHKLQA* >Glyma02g09680.4 sequence type=predicted peptide gene model=Glyma02g09680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVALSLQGVQASPAQPQCQRPSSRGGRAAGVIRIRCGIAEPSGEPAPLGQKTRYNDGIFEKAFMTLFARKMEKFADPPAPAGKARENKGWWDWGYDYESFVDVSRRVMQRRSRIQQQQVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFDWLVGPSEVMEVEINGVKQKSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMTPNFEDMSCDMVYGQVPPTFEEDPVSKQACYANICSMAKPSSSVCHKLQA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
