SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G64660 | AT | Annotation by Michelle Graham. TAIR10: methionine gamma-lyase | chr1:24028977-24030537 FORWARD LENGTH=441 | SoyBase | E_val: 0 | ISS |
| GO:0006520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0006730 | GO-bp | Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process | SoyBase | N/A | ISS |
| GO:0009970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to sulfate starvation | SoyBase | N/A | ISS |
| GO:0019458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine catabolic process via 2-oxobutanoate | SoyBase | N/A | ISS |
| GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
| GO:0051289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein homotetramerization | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0018826 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methionine gamma-lyase activity | SoyBase | N/A | ISS |
| KOG0053 | KOG | Cystathionine beta-lyases/cystathionine gamma-synthases | JGI | ISS | |
| PTHR11808 | Panther | CYSTEINE/METHIONINE METABOLISM PYRIDOXAL-5-PHOSPHATE ENZYMES | JGI | ISS | |
| PTHR11808:SF9 | Panther | gb def: aminotransferase, class v [deinococcus radiodurans] | JGI | ISS | |
| PF01053 | PFAM | Cys/Met metabolism PLP-dependent enzyme | JGI | ISS | |
| UniRef100_B9RYU1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cystathionine gamma-synthase, putative n=1 Tax=Ricinus communis RepID=B9RYU1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JDK2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDK2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g09650 not represented in the dataset |
Glyma02g09650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g087900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g09650.1 sequence type=CDS gene model=Glyma02g09650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGAAAGCGCGGTGACGAACAGGAAGCGCAGCAGCGGGGACGACGCCGTTTCGGAGAATGACAGAAAGCGGAAGAATATGGTGGCACGCAACATGGACCCGGCTGAGGCGTTGGCCTTGACGCGGCACGAGTTCGGGGAGCACGGTGGCGTAAACATGTCGATCGAGGCCTCGGCGACGTTCACGGTGATGGAGCCGGAGACCCTCGGTCGCATGTTCGCCGGCGAGCTGGGCCCGGACCGCGATTTCTTCATTTACAGCCGCCACTTCAACCCGACGGTTGTCAACCTGGGCCGCCACATGGCCGCCCTGGAAGGCACGGAGGCCGCCTACTGCACAGCCAGCGGCATGGCCGCGATCTCCTCGGTACTCCTCCAGCTCTGTAGCACCGGCGGGCACGTGGTCGCCTCCACCACTCTCTATGGTGGGACTCACGCCCTCCTCACGCACTTCCTCCCCGGGAAATGCAACATCACCACGACGTTCGTGGACATCGCCGATTTGGAAAGCGTGGAGAGTGCCATCGTGGAAGGGAAGACGAACGTGCTGTACTTCGAGTCCATGGCGAATCCGAGCCTGAAGGTCGCAGACATTCCGGAACTGTGCCGCGTGGGACACGCAAAGGGCGTCACGGTGGTCGTCGACAACACCTTCGCTCCCATGGTCATCTCCCCCGCTCGTCTCGGCGCTGACGTCGTCGTTCACAGCATCTCAAAGTTTATCAGTGGCGGTGCTGATATTATTGCAGGGGCTGTGTGCGGGCCTGCGAGCCTAGTGAATTCGATGATGGACCTTCACGACGGGTCCCTGATGCTGCTGGGTCCAACAATGAATGCGAAGGTGGCGTTTGAACTGTCAGAGAGAATCCCACACTTGAGCCTTAGGATGAAGGAGCATTGCCACCGTGCGTTGGTGTTCGCCACAAGGCTCAAGAAATTAGGGTTGAAGGTGATCTACCCAGGCCTTGAAGATCACCCACAGCACAAATTGCTGAAATCAATAGCCAACAGGGAATATGGCTACGGTGGGCTTCTTTGCATTGACATGGGAACGGTGGAGAGGGCAAACCTGTTAATGGCTCACTTGCAAAATGATGCTCAATTTGGATTCATGGCTGTTAGCTTGGGGTATTATGAGACCCTCATGTCCTGCTCTGGTAGCAGCACTAGCAGTGAGATGACTGAGGAGGAACAGAAGCTTGCTGGAATCTCCCCAGGCCTGGTAAGGATGTCCATTGGATACATTGGCACATTGGAGCAGAAATGGAGTCAGATGGAAATGGCACTCGAAAGATTCCAGGAAAAGGAGCCACTAGTTTAA
>Glyma02g09650.1 sequence type=predicted peptide gene model=Glyma02g09650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAESAVTNRKRSSGDDAVSENDRKRKNMVARNMDPAEALALTRHEFGEHGGVNMSIEASATFTVMEPETLGRMFAGELGPDRDFFIYSRHFNPTVVNLGRHMAALEGTEAAYCTASGMAAISSVLLQLCSTGGHVVASTTLYGGTHALLTHFLPGKCNITTTFVDIADLESVESAIVEGKTNVLYFESMANPSLKVADIPELCRVGHAKGVTVVVDNTFAPMVISPARLGADVVVHSISKFISGGADIIAGAVCGPASLVNSMMDLHDGSLMLLGPTMNAKVAFELSERIPHLSLRMKEHCHRALVFATRLKKLGLKVIYPGLEDHPQHKLLKSIANREYGYGGLLCIDMGTVERANLLMAHLQNDAQFGFMAVSLGYYETLMSCSGSSTSSEMTEEEQKLAGISPGLVRMSIGYIGTLEQKWSQMEMALERFQEKEPLV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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