SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67950 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:25478884-25480420 REVERSE LENGTH=279 | SoyBase | E_val: 3.00E-98 | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| PTHR11732 | Panther | ALDO/KETO REDUCTASE | JGI | ISS | |
| PTHR11732:SF1 | Panther | DIMERIC DIHYDRODIOL DEHYDROGENASE-RELATED | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_C6TI28 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TI28_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7LBH9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein vip1 n=1 Tax=Medicago truncatula RepID=G7LBH9_MEDTR | SoyBase | E_val: 2.00E-142 | ISS |
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Glyma02g09510 not represented in the dataset |
Glyma02g09510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g086600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g09510.2 sequence type=transcript gene model=Glyma02g09510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGCAAAATTACGCAAGAGCCACTCACATCATCACATGTACAATGACAGCCAAATAACAGTCACATGATGACTCATTACACCCTAACCAACGAACGACCTCCCTCAACAATAATTCTTCTGATCCGTTTCGTTCAAATCAAAATAAAAAATCGCCTCTTTGGAACGCTGCCTCCTTCTGACAAAAAAACATTGTACCATCCGAAATGTCGATAAAAACAGTTAAGGTTAGCAACATATCATTGGTTACTTTCAAGAAGGACATTGAAGAATTCTTTTCATTCTCAGGTGATATTCGATATATTGAGATGCAAAGGGAAAGTGGTCACACTCAGGTTGCTTATGTTACATTCAAGGATACACAGGGAGCAGACACGGCAGTTCTCTTAACGGGTTCCAAGATAGGTGATCTATATGTCACCATCACACCTGTGGAGAAGTATCAGCTGCCCCCTGAAGCACTTCCCTCAAGTCCAACAAACCAAAGCCCTGATGCAGTTAAGAAGGCTGAAGATGTAATGAGCACCATGCTTGCTAAGGGTTTCATTTTAGGAAAGGATGCTATCAACAAGGCAAAAGCCTTTGATGAACATCATCAATTAACCTCAAATGCTTCGTCCACAGTTGCTTCCATTGATCGTAAAATAGGTTTAAGTGATAAACTAAGTTTTGGAACAGCTGTTTTCAATGGAAAGGTGAGAGAGATGGATGAAAGGTATCAGCTTTCTGAAATGACAAAGTCTGCTATGGCTGCTGCAGAGCAAAAGGCAAGTAGTGCTGGATCTGCCATCATGAGCAATCCTTACGTAAAAAGTGGAGCTTCATGGTTTTCTAGTGCCTTTACTGCTATAGCAAAGGCAGCCGAGGATGTCAGCACGATGACCAAGGAAAAGGTTGAACAGGCTGTGGTGGAAAGGAACGAGATCATTTATGGTGAAAGGAAAGGGACTGTTGATGAATTTGCAAAGACGCACTTAGAGGAGGCTTCAGACATTGGCCCTGCAGTAGTTCCTGTTAATTCAGATGATGACAGAAAGCTGGCAACAATTTTATAACTCAAGTTAATTCAGAATCCCTTATTCCCACGTACACAGTTGGATTTATTTAGTTAACATAGTTATTGTCAGATTTCAGTTCCTGCAAGTTTGCTGTACATTGATAAGTCTTCTTGATTGTTATAGTGATGTAAAGGTTTGTCTGACAGATGTGGTGCCTAAATATGGTCAACATTCATTTCAAAAAATTATTTGTTATTTGTTATTTTTTGAGTTTTTTCTTCATTCAATTCTCCCTGTAGGTCATACGTTTACGGAGGGATTTTAATACAAACAGGACAATCAATATAATTTAATATTGCAGAACATTATGTCATGGAGAGCGTGACAGATAAGTTCATGTTCATTGTTTTTGTTTTCCTTTCCAATGAAAATATTGAATAAATATATAGCTTTGCTTTTTCACA
>Glyma02g09510.1 sequence type=CDS gene model=Glyma02g09510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGGCCATGGTGGAACATACGGATCAAAGAGCTGAAGCTATTCCCCAATCCACAGCTGCACCAAATTGGACTATTCATGTGTCAGACATAAAAACAGTTAAGGTTAGCAACATATCATTGGTTACTTTCAAGAAGGACATTGAAGAATTCTTTTCATTCTCAGGTGATATTCGATATATTGAGATGCAAAGGGAAAGTGGTCACACTCAGGTTGCTTATGTTACATTCAAGGATACACAGGGAGCAGACACGGCAGTTCTCTTAACGGGTTCCAAGATAGGTGATCTATATGTCACCATCACACCTGTGGAGAAGTATCAGCTGCCCCCTGAAGCACTTCCCTCAAGTCCAACAAACCAAAGCCCTGATGCAGTTAAGAAGGCTGAAGATGTAATGAGCACCATGCTTGCTAAGGGTTTCATTTTAGGAAAGGATGCTATCAACAAGGCAAAAGCCTTTGATGAACATCATCAATTAACCTCAAATGCTTCGTCCACAGTTGCTTCCATTGATCGTAAAATAGGTTTAAGTGATAAACTAAGTTTTGGAACAGCTGTTTTCAATGGAAAGGTGAGAGAGATGGATGAAAGGTATCAGCTTTCTGAAATGACAAAGTCTGCTATGGCTGCTGCAGAGCAAAAGGCAAGTAGTGCTGGATCTGCCATCATGAGCAATCCTTACGTAAAAAGTGGAGCTTCATGGTTTTCTAGTGCCTTTACTGCTATAGCAAAGGCAGCCGAGGATGTCAGCACGATGACCAAGGAAAAGGTTGAACAGGCTGTGGTGGAAAGGAACGAGATCATTTATGGTGAAAGGAAAGGGACTGTTGATGAATTTGCAAAGACGCACTTAGAGGAGGCTTCAGACATTGGCCCTGCAGTAGTTCCTGTTAATTCAGATGATGACAGAAAGCTGGCAACAATTTTATAA >Glyma02g09510.2 sequence type=CDS gene model=Glyma02g09510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGATAAAAACAGTTAAGGTTAGCAACATATCATTGGTTACTTTCAAGAAGGACATTGAAGAATTCTTTTCATTCTCAGGTGATATTCGATATATTGAGATGCAAAGGGAAAGTGGTCACACTCAGGTTGCTTATGTTACATTCAAGGATACACAGGGAGCAGACACGGCAGTTCTCTTAACGGGTTCCAAGATAGGTGATCTATATGTCACCATCACACCTGTGGAGAAGTATCAGCTGCCCCCTGAAGCACTTCCCTCAAGTCCAACAAACCAAAGCCCTGATGCAGTTAAGAAGGCTGAAGATGTAATGAGCACCATGCTTGCTAAGGGTTTCATTTTAGGAAAGGATGCTATCAACAAGGCAAAAGCCTTTGATGAACATCATCAATTAACCTCAAATGCTTCGTCCACAGTTGCTTCCATTGATCGTAAAATAGGTTTAAGTGATAAACTAAGTTTTGGAACAGCTGTTTTCAATGGAAAGGTGAGAGAGATGGATGAAAGGTATCAGCTTTCTGAAATGACAAAGTCTGCTATGGCTGCTGCAGAGCAAAAGGCAAGTAGTGCTGGATCTGCCATCATGAGCAATCCTTACGTAAAAAGTGGAGCTTCATGGTTTTCTAGTGCCTTTACTGCTATAGCAAAGGCAGCCGAGGATGTCAGCACGATGACCAAGGAAAAGGTTGAACAGGCTGTGGTGGAAAGGAACGAGATCATTTATGGTGAAAGGAAAGGGACTGTTGATGAATTTGCAAAGACGCACTTAGAGGAGGCTTCAGACATTGGCCCTGCAGTAGTTCCTGTTAATTCAGATGATGACAGAAAGCTGGCAACAATTTTATAA
>Glyma02g09510.1 sequence type=predicted peptide gene model=Glyma02g09510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAMVEHTDQRAEAIPQSTAAPNWTIHVSDIKTVKVSNISLVTFKKDIEEFFSFSGDIRYIEMQRESGHTQVAYVTFKDTQGADTAVLLTGSKIGDLYVTITPVEKYQLPPEALPSSPTNQSPDAVKKAEDVMSTMLAKGFILGKDAINKAKAFDEHHQLTSNASSTVASIDRKIGLSDKLSFGTAVFNGKVREMDERYQLSEMTKSAMAAAEQKASSAGSAIMSNPYVKSGASWFSSAFTAIAKAAEDVSTMTKEKVEQAVVERNEIIYGERKGTVDEFAKTHLEEASDIGPAVVPVNSDDDRKLATIL* >Glyma02g09510.2 sequence type=predicted peptide gene model=Glyma02g09510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSIKTVKVSNISLVTFKKDIEEFFSFSGDIRYIEMQRESGHTQVAYVTFKDTQGADTAVLLTGSKIGDLYVTITPVEKYQLPPEALPSSPTNQSPDAVKKAEDVMSTMLAKGFILGKDAINKAKAFDEHHQLTSNASSTVASIDRKIGLSDKLSFGTAVFNGKVREMDERYQLSEMTKSAMAAAEQKASSAGSAIMSNPYVKSGASWFSSAFTAIAKAAEDVSTMTKEKVEQAVVERNEIIYGERKGTVDEFAKTHLEEASDIGPAVVPVNSDDDRKLATIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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