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Report for Sequence Feature Glyma02g09451

Feature Type:gene_model
Chromosome:Gm02
Start:7393582
stop:7398737
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g09451
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16110AT Annotation by Michelle Graham. TAIR10: response regulator 2 | chr4:9112979-9115785 FORWARD LENGTH=664 SoyBaseE_val: 3.00E-110ISS
GO:0000160GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0009736GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seed germination SoyBaseN/AISS
GO:0010119GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0031537GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin metabolic process SoyBaseN/AISS
GO:0048831GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of shoot development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000156GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR24423Panther JGI ISS
PTHR24423:SF449Panther JGI ISS
PTHR26402Panther RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM JGI ISS
PTHR26402:SF38Panther TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED JGI ISS
PF00072PFAM Response regulator receiver domain JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_B9T4M7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Two-component sensor histidine kinase bacteria, putative n=1 Tax=Ricinus communis RepID=B9T4M7_RICCO SoyBaseE_val: 0ISS
UniRef100_I1KKW6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KKW6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g09451
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g09451 not represented in the dataset
Glyma02g09451 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g09451
ParalogEvidenceComments
Glyma07g26890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g09451 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g085900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g09451
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g09451
>Glyma02g09451.2   sequence type=transcript   gene model=Glyma02g09451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAATCCGTTTTTTTTTTCTGAAAAAATAATACTTTGACTTTGTTTTAGGGGAACTGAGCTTAATGTCACTTAAACGATGACAATTTTGGTTTTGTTAGGGTCATGACTCATGAGTGACCATGCACCAGTCTTTCGGGATTTACCTAGTTTGACTTTGATTTGTACAATGCAAAATAGTTATCGTTTTAAGTTAGCCCTTTAAATATTCTGCTTAGAGTTTTATGTATTTCATTTCTAAATCGTTTAATAGATTTGTACCTATGGAAAGAAGGATGTCCTAGGAAGATTTGCATGATATTCTTGCTTTCACAGTTGTTATGGCAAAAGGTTACCACATGCACTGAGGCTACTGTGGCTTTGAATCTTCTGCGGGAAAGGAAAGGTTGTTTTGATGTGGTGCTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGCTGGAAATGGACCTTCCCGTAATTATGATGTCTGGTGATAGTACTACAAGTGCTGTCATGAAGGGAATCAGGCATGGGGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTAAGGAATATATGGCAGCATGTTGTTCGGAAATTCTGGAATGACAATAAAGAACTGGATAATTCTGGCAGCATGGAGGACAGTGATCGAAATAAATGGGGGAATGATGACGCTGAATATACTTCTTCTGTTGCTGATGCAGCAGAAGTAGTTAAAGCACCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGATATTGAATTGGAGAGTGATGATCCAGCTACATCTAAGAAGCCCCGTGTAGTGTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTTGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCAAGTCATTTGCAGAAATTTAGACTTTACTTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATGCTAAATGCAATTCCAGGGACTATAGAATCCAAGCTGGGTGCTACTGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCCCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTCACCCGGCAACTCACATGATGTCTACAGTGGACCAGACTACCCTACTGCAAGCATCGATACAGGGGCTAAAACATTCCCATGCTGAACATGCTGTGGCGTATGGTCAGCCTCTTGTAAAGTGTCATTCCAACATTGGCAAGAATTTCTCTCCATCTATCTTAACTGTAAATGATACGTCATCAGGATATGGTACATGGCCATCATCTAATAATACAATTGGTTTAGTGAGACCCAATAGTAGTGTTGAAAGGGTGGGTATTCAGAATAACAACATGCTGATGGATATATTAGAGCACCAACAAAGCCAGCAGCACCAGCAAAAGCAACAGCTGCAGCAGCAGTCACTGATACATGATCAAAGTTGTTCAATCAATGTTCAACCATCTTGCATGGTGGTTCCCTCTCAATCCTCTGACACTTTCCAGGCAGTAAATAGTCCTGCTTCTGTCAACCAGGATTTCAGTTTTGCCAGGAATGCCATTATTGATTATAGTCTATTGTCACAAAAATCAAAGAATTCATTTAGTGCATCTCAATTTCCTGGTGGGGACACAAAAGCTCGAGGTGTTCTCTATGGGTATTCTACACCCTCCACTTGTTCAACAAGCTCCAGCAATGGCAATAGACAACAGCTTCAAAACTCCACTTTAACATTTGGTGCTGCAAGACCTTTGCCTAGTCTTTTGCCCATGTCTGACAGAAAAGATCCCTATGGTTTTAAATCAGGTGATTTACTTGATCAAGTATGCTTTAGGAATCTTGGGTTTGTTGGCAAAGGTACCTGCATTCCGAGTAGGTTTGTAGAAAATGAAATTGAGTCATCTGTAAGTGATTTTAGTCAAATGAAAGTCAATGTAGATAGCAGTGGCAACACACGGAATCAGGAGCCAAATTTTATAAATATTCCAAAAGTGAGCCACCCTATCATAGAAAGATATCCATCTCGTGATCATTCACGTGTGTTCACTGAATAGGTTCAAATATTTGTTGAGAAGGCCTTTCTATACAGGTACAGAGTCAGTAGTAGTAGTAATCCTTTAGAGTCTGTCTTCATTGGGCTCTACAATGCACCAAAGAATCGATGGGAAGGCCTTTCCATAAAGGTACAGATTGTTTCCTCGCTTCATTCTCTTGGACAGTAACTGTAGTTAGTTTTTGTCTTCATGGAGCTCTACAAGACCTGTGTATAGAGCCCCATGAAAACTGACTCTGTAGTCTGCATTACTTCTAAAAACTGAAGAGGAAACAATGTGTAAAATTATGAAAGACCTTCTCACCAATTATTTGGTGCATTGTAGTGCCCAAGGAAGACTGACTCTGTATAAAGGATTAGTATCTATAGGTGTTCGTTTGCTCGTTAGTAGCTGCACATGTATCTAGGGATGTTCTATAATCTATAAACTAGTTTGTAGGGAAGTAAAATCTTCTGCTAACTTCTACTGTTTGAATTGATGGCTTGTTGCCATCAAAATTTTATCTAGGGATTCTTTGTTTGTAATGTTAAACACTTGGTAGTTATCCATTATGAAAGTTGTCCAAGTTGTATGGTGTCTAATCGTACTTTTGTATGTCGTATTAACTGCTTATAGCTGTTAGTTGAGACTTGAGACTCGTCATATTTAGGGACAATTACAATGTTTACCCTTATTTGTTTCCCTTAGAAAGTTCCATTGTATTTTCCATTCTTTATATTTGTGGTCAAAGTATTTTCATTTCCAATTCACCAATTTGAGTGTGTTGGCCCCATTATTGAAAATTATAAA
Coding sequences of Glyma02g09451
>Glyma02g09451.1   sequence type=CDS   gene model=Glyma02g09451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCCTGTGCGGCTGCGGCGGAGTTTCCGGTGGGTCTCCGGGTTCTTGTGGTCGACGACGACGCCACCACGTTGAAGATTATCGAGCAAATGTCCATTCGCTGCCGTTACCGCGTTACCACATGCACTGAGGCTACTGTGGCTTTGAATCTTCTGCGGGAAAGGAAAGGTTGTTTTGATGTGGTGCTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGCTGGAAATGGACCTTCCCGTAATTATGATGTCTGGTGATAGTACTACAAGTGCTGTCATGAAGGGAATCAGGCATGGGGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTAAGGAATATATGGCAGCATGTTGTTCGGAAATTCTGGAATGACAATAAAGAACTGGATAATTCTGGCAGCATGGAGGACAGTGATCGAAATAAATGGGGGAATGATGACGCTGAATATACTTCTTCTGTTGCTGATGCAGCAGAAGTAGTTAAAGCACCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGATATTGAATTGGAGAGTGATGATCCAGCTACATCTAAGAAGCCCCGTGTAGTGTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTTGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCAAGTCATTTGCAGAAATTTAGACTTTACTTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATGCTAAATGCAATTCCAGGGACTATAGAATCCAAGCTGGGTGCTACTGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCCCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTCACCCGGCAACTCACATGATGTCTACAGTGGACCAGACTACCCTACTGCAAGCATCGATACAGGGGCTAAAACATTCCCATGCTGAACATGCTGTGGCGTATGGTCAGCCTCTTGTAAAGTGTCATTCCAACATTGGCAAGAATTTCTCTCCATCTATCTTAACTGTAAATGATACGTCATCAGGATATGGTACATGGCCATCATCTAATAATACAATTGGTTTAGTGAGACCCAATAGTAGTGTTGAAAGGGTGGGTATTCAGAATAACAACATGCTGATGGATATATTAGAGCACCAACAAAGCCAGCAGCACCAGCAAAAGCAACAGCTGCAGCAGCAGTCACTGATACATGATCAAAGTTGTTCAATCAATGTTCAACCATCTTGCATGGTGGTTCCCTCTCAATCCTCTGACACTTTCCAGGCAGTAAATAGTCCTGCTTCTGTCAACCAGGATTTCAGTTTTGCCAGGAATGCCATTATTGATTATAGTCTATTGTCACAAAAATCAAAGAATTCATTTAGTGCATCTCAATTTCCTGGTGGGGACACAAAAGCTCGAGGTGTTCTCTATGGGTATTCTACACCCTCCACTTGTTCAACAAGCTCCAGCAATGGCAATAGACAACAGCTTCAAAACTCCACTTTAACATTTGGTGCTGCAAGACCTTTGCCTAGTCTTTTGCCCATGTCTGACAGAAAAGATCCCTATGGTTTTAAATCAGGTGATTTACTTGATCAAGTATGCTTTAGGAATCTTGGGTTTGTTGGCAAAGGTACCTGCATTCCGAGTAGGTTTGTAGAAAATGAAATTGAGTCATCTGTAAGTGATTTTAGTCAAATGAAAGTCAATGTAGATAGCAGTGGCAACACACGGAATCAGGAGCCAAATTTTATAAATATTCCAAAAGTGAGCCACCCTATCATAGAAAGATATCCATCTCGTGATCATTCACGTGTGTTCACTGAATAG

>Glyma02g09451.2   sequence type=CDS   gene model=Glyma02g09451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATATTCTTGCTTTCACAGTTGTTATGGCAAAAGGTTACCACATGCACTGAGGCTACTGTGGCTTTGAATCTTCTGCGGGAAAGGAAAGGTTGTTTTGATGTGGTGCTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGCTGGAAATGGACCTTCCCGTAATTATGATGTCTGGTGATAGTACTACAAGTGCTGTCATGAAGGGAATCAGGCATGGGGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTAAGGAATATATGGCAGCATGTTGTTCGGAAATTCTGGAATGACAATAAAGAACTGGATAATTCTGGCAGCATGGAGGACAGTGATCGAAATAAATGGGGGAATGATGACGCTGAATATACTTCTTCTGTTGCTGATGCAGCAGAAGTAGTTAAAGCACCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGATATTGAATTGGAGAGTGATGATCCAGCTACATCTAAGAAGCCCCGTGTAGTGTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTTGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCAAGTCATTTGCAGAAATTTAGACTTTACTTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATGCTAAATGCAATTCCAGGGACTATAGAATCCAAGCTGGGTGCTACTGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCCCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTCACCCGGCAACTCACATGATGTCTACAGTGGACCAGACTACCCTACTGCAAGCATCGATACAGGGGCTAAAACATTCCCATGCTGAACATGCTGTGGCGTATGGTCAGCCTCTTGTAAAGTGTCATTCCAACATTGGCAAGAATTTCTCTCCATCTATCTTAACTGTAAATGATACGTCATCAGGATATGGTACATGGCCATCATCTAATAATACAATTGGTTTAGTGAGACCCAATAGTAGTGTTGAAAGGGTGGGTATTCAGAATAACAACATGCTGATGGATATATTAGAGCACCAACAAAGCCAGCAGCACCAGCAAAAGCAACAGCTGCAGCAGCAGTCACTGATACATGATCAAAGTTGTTCAATCAATGTTCAACCATCTTGCATGGTGGTTCCCTCTCAATCCTCTGACACTTTCCAGGCAGTAAATAGTCCTGCTTCTGTCAACCAGGATTTCAGTTTTGCCAGGAATGCCATTATTGATTATAGTCTATTGTCACAAAAATCAAAGAATTCATTTAGTGCATCTCAATTTCCTGGTGGGGACACAAAAGCTCGAGGTGTTCTCTATGGGTATTCTACACCCTCCACTTGTTCAACAAGCTCCAGCAATGGCAATAGACAACAGCTTCAAAACTCCACTTTAACATTTGGTGCTGCAAGACCTTTGCCTAGTCTTTTGCCCATGTCTGACAGAAAAGATCCCTATGGTTTTAAATCAGGTGATTTACTTGATCAAGTATGCTTTAGGAATCTTGGGTTTGTTGGCAAAGGTACCTGCATTCCGAGTAGGTTTGTAGAAAATGAAATTGAGTCATCTGTAAGTGATTTTAGTCAAATGAAAGTCAATGTAGATAGCAGTGGCAACACACGGAATCAGGAGCCAAATTTTATAAATATTCCAAAAGTGAGCCACCCTATCATAGAAAGATATCCATCTCGTGATCATTCACGTGTGTTCACTGAATAG
Predicted protein sequences of Glyma02g09451
>Glyma02g09451.1   sequence type=predicted peptide   gene model=Glyma02g09451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPCAAAAEFPVGLRVLVVDDDATTLKIIEQMSIRCRYRVTTCTEATVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKFWNDNKELDNSGSMEDSDRNKWGNDDAEYTSSVADAAEVVKAPKKRSSLKEEDIELESDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNAIPGTIESKLGATGRFDIQALAAAGHVPPETLAALHAELLGHPATHMMSTVDQTTLLQASIQGLKHSHAEHAVAYGQPLVKCHSNIGKNFSPSILTVNDTSSGYGTWPSSNNTIGLVRPNSSVERVGIQNNNMLMDILEHQQSQQHQQKQQLQQQSLIHDQSCSINVQPSCMVVPSQSSDTFQAVNSPASVNQDFSFARNAIIDYSLLSQKSKNSFSASQFPGGDTKARGVLYGYSTPSTCSTSSSNGNRQQLQNSTLTFGAARPLPSLLPMSDRKDPYGFKSGDLLDQVCFRNLGFVGKGTCIPSRFVENEIESSVSDFSQMKVNVDSSGNTRNQEPNFINIPKVSHPIIERYPSRDHSRVFTE*

>Glyma02g09451.2   sequence type=predicted peptide   gene model=Glyma02g09451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIFLLSQLLWQKVTTCTEATVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKFWNDNKELDNSGSMEDSDRNKWGNDDAEYTSSVADAAEVVKAPKKRSSLKEEDIELESDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNAIPGTIESKLGATGRFDIQALAAAGHVPPETLAALHAELLGHPATHMMSTVDQTTLLQASIQGLKHSHAEHAVAYGQPLVKCHSNIGKNFSPSILTVNDTSSGYGTWPSSNNTIGLVRPNSSVERVGIQNNNMLMDILEHQQSQQHQQKQQLQQQSLIHDQSCSINVQPSCMVVPSQSSDTFQAVNSPASVNQDFSFARNAIIDYSLLSQKSKNSFSASQFPGGDTKARGVLYGYSTPSTCSTSSSNGNRQQLQNSTLTFGAARPLPSLLPMSDRKDPYGFKSGDLLDQVCFRNLGFVGKGTCIPSRFVENEIESSVSDFSQMKVNVDSSGNTRNQEPNFINIPKVSHPIIERYPSRDHSRVFTE*






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