SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G01730 | AT | Annotation by Michelle Graham. TAIR10: cleavage and polyadenylation specificity factor 73 kDa subunit-II | chr2:320597-323845 FORWARD LENGTH=613 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0010197 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG1136 | KOG | Predicted cleavage and polyadenylation specificity factor (CPSF subunit) | JGI | ISS | |
| PTHR11203 | Panther | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR | JGI | ISS | |
| PTHR11203:SF8 | Panther | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR-RELATED | JGI | ISS | |
| PF00753 | PFAM | Metallo-beta-lactamase superfamily | JGI | ISS | |
| PF07521 | PFAM | RNA-metabolising metallo-beta-lactamase | JGI | ISS | |
| PF10996 | PFAM | Beta-Casp domain | JGI | ISS | |
| UniRef100_B9SJ31 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cleavage and polyadenylation specificity factor, putative n=1 Tax=Ricinus communis RepID=B9SJ31_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JDH7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDH7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g09380 not represented in the dataset |
Glyma02g09380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g085400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g09380.1 sequence type=CDS gene model=Glyma02g09380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGATTGAAACGCTCGTGCTGGGCGCTGGTCAAGAAGTTGGCAAGAGCTGCGTGGTGGTAACCATCAACGCCAAGCGAATCATGTTCGATTGCGGAATGCACATGGGCTACTTGGATCATCGTCGTTACCCTGATTTCACCCGCATCTCCCCCAGTAGAGATCTCAACTCTGCCCTCTCTTGCATCATCATCACTCACTTTCACTTGGATCACGTTGGTGCTTTAGCTTACTTCACTGAAGTTTTGGGGTATAACGGACCGGTTTACATGACGTACCCGACAAAAGCTTTGGCTCCTTTAATGTTGGAAGACTATCGGAAAGTGATGGTTGATCGCCGGGGGGAGGAAGAGCTATTCTCTTCTGATCAAATTGCTGAGTGCATGAAGAAAGTTATTGCTGTTGATCTGAGGCAGACTGTACAAGTAGAGAAAGACCTGCAGATACGTGCCTATTATGCAGGACATGTTATTGGAGCTGCAATGTTCTATGCAAAAGTGGGAGACGCAGAAATGGTTTATACAGGAGACTATAATATGACACCAGATAGACACCTTGGAGCAGCTCAAATTGATCGACTACGACTTGACCTTCTTATAACTGAATCCACATATGCGACTACAATACGTGATTCAAGATATGCTCGAGAGAGGGAATTCCTTAAAGCTGTTCATAAATGTGTATCTTGTGGAGGAAAGGTGCTTATTCCAACATTTGCACTTGGAAGAGCTCAGGAACTATGCATTTTGTTGGAAGACTACTGGGAACGCATGAATTTGAAGGTTCCTATCTACTTCTCAGCAGGTTTAACAATCCAAGCTAATGCATATTACAAGATGCTTATTCGTTGGACAAGGCAGAAGATTAAAGATACATACTCTAAACATAATGCTTTTGATTTTAAGAATGTTCAAAAATTTGAAAGGTCTATGATAGATGCTCCTGGCCCTTGTGTTCTTTTCGCCACTCCTGGGATGTTAAGCGGTGGATTTTCAGTTGAAGTTTTTAAGCACTGGGCAGTGTCAGAAAATAACCTTGTCAGTTTGCCTGGGTATTGTGTGCCTGGAACAATAGGTCATAAATTAATGTCAGATAAGCATGACAAAGTTGACCTGGATCCTAATACAAAAATAGATGTGCGTTGCCAGATTCATCAGTTGGCTTTTAGTCCTCACACGGATTCTAAAGGGATAATGGATCTTGTAAATTTTCTCTCCCCGAAGCATGTTATACTAGTGCACGGCGAGAAGCATAAGATGGCTTCCCTTAAAGAAAAAATTCATTCTGAATTGGGGATTCAATGTTATGATCCTGCAAATAATGAAACTGTAACCATTCCTTCAGCTAACTATGTATATGCAGAGACCTCAGACACTTTCATTCGAAGCTGCTTGAGTCCGAACTTCACATTTCAGAAGTGCAGTTCGGTGGACTTATGTAACTCAACTACGGTAGACAGAAACTTAATGCCTGAGCTTCAAGTTGAAGATGAAAGGGTAGCAGAAGGAGTTTTGGTCTTGGAGAAAGGAAAAAAGGCAAAGATTGTACACCAGGATGAACTTTTGCTTATGTTGGAGGAACAGAAGCACGATGCTTAG
>Glyma02g09380.1 sequence type=predicted peptide gene model=Glyma02g09380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAIETLVLGAGQEVGKSCVVVTINAKRIMFDCGMHMGYLDHRRYPDFTRISPSRDLNSALSCIIITHFHLDHVGALAYFTEVLGYNGPVYMTYPTKALAPLMLEDYRKVMVDRRGEEELFSSDQIAECMKKVIAVDLRQTVQVEKDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTPDRHLGAAQIDRLRLDLLITESTYATTIRDSRYAREREFLKAVHKCVSCGGKVLIPTFALGRAQELCILLEDYWERMNLKVPIYFSAGLTIQANAYYKMLIRWTRQKIKDTYSKHNAFDFKNVQKFERSMIDAPGPCVLFATPGMLSGGFSVEVFKHWAVSENNLVSLPGYCVPGTIGHKLMSDKHDKVDLDPNTKIDVRCQIHQLAFSPHTDSKGIMDLVNFLSPKHVILVHGEKHKMASLKEKIHSELGIQCYDPANNETVTIPSANYVYAETSDTFIRSCLSPNFTFQKCSSVDLCNSTTVDRNLMPELQVEDERVAEGVLVLEKGKKAKIVHQDELLLMLEEQKHDA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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