Glyma02g09162 - SoyBase

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Report for Sequence Feature Glyma02g09162

Feature Type:	gene_model
Chromosome:	Gm02
Start:	7154186
stop:	7158339
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g09162

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G43700	AT	Annotation by Michelle Graham. TAIR10: VIRE2-interacting protein 1 \| chr1:16484352-16486017 FORWARD LENGTH=341	SoyBase	E_val: 1.00E-12	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0008272	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfate transport	SoyBase	N/A	ISS
GO:0009294	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0009970	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to sulfate starvation	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0045596	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cell differentiation	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0051170	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear import	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
GO:0051019	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mitogen-activated protein kinase binding	SoyBase	N/A	ISS
UniRef100_Q0GPF5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP131 n=2 Tax=Glycine max RepID=Q0GPF5_SOYBN	SoyBase	E_val: 7.00E-14	ISS
UniRef100_UPI000233748D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233748D related cluster n=1 Tax=unknown RepID=UPI000233748D	SoyBase	E_val: 5.00E-62	ISS

Expression Patterns of Glyma02g09162

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g09162 not represented in the dataset	Glyma02g09162 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g09162

Paralog	Evidence	Comments
Glyma16g28385	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g09162 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g083100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g09162

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g09162

Limit To All Plant Sequences

>Glyma02g09162.2   sequence type=transcript   gene model=Glyma02g09162   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTAACTCTTCTTATAACTCACAATTGGAAAAGAGGACAAAAGAAGGAAGAAGGAGAAAGATCAAGGGAGACCTACACCCACCCACACTCTTGACATTATCGAGATTCTTGCTAATAGGCAATTTGCTTCCCCATTAAAGGAGATGAAGATTCGTTACATAATCATGTGGAAGAAGGTGCAGAGGCTTAGGATTAAATCTGCTAACCTCTCAGCAAGTATAGCCATGCTTCGGAGAGACTGCATAGCTTCGGATGAAAGGATTAAGAAGCTGAGAATGCTTGTAGCGGCTCTGAGGAAAGAAGCACAATTTAAAGACGAAGTCCACAAGGCACAACAGGAAGAATTAAAGCGCCTTAGGGAAAAAACTATTCTTTCAGGGAACTATCCTCCTTATGGTAGGCGCTCCTCCCTCTGAACAACCTTTCAATGGACAAAATTGCCTCAACTCCATGAACATCAATTAGCAGAAGTAGCTCATAATAGTAACAGTAATTAAATTATGTGTGTGTGGTGAGACTTGTGAAGGGTATATTATTATGCTGTTCAGTGTTGTTTATTTTCTCTACTTCTAGATTGGAAGCACAACCTTTGAAGTTTTATGTTTTATAGCTTTTTGGA

Coding sequences of Glyma02g09162

Limit To All Plant Sequences

>Glyma02g09162.1   sequence type=CDS   gene model=Glyma02g09162   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCTTTAATATGCATATGATGAGGATTCTTGCTAATAGGCAATTTGCTTCCCCATTAAAGGAGATGAAGATTCGTTACATAATCATGTGGAAGAAGGTGCAGAGGCTTAGGATTAAATCTGCTAACCTCTCAGCAAGTATAGCCATGCTTCGGAGAGACTGCATAGCTTCGGATGAAAGGATTAAGAAGCTGAGAATGCTTGTAGCGGCTCTGAGGAAAGAAGCACAATTTAAAGACGAAGTCCACAAGGCACAACAGGAAGAATTAAAGCGCCTTAGGGAAAAAACTATTCTTTCAGGGAACTATCCTCCTTATGGTAGGCGCTCCTCCCTCTGA

>Glyma02g09162.2   sequence type=CDS   gene model=Glyma02g09162   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATTCGTTACATAATCATGTGGAAGAAGGTGCAGAGGCTTAGGATTAAATCTGCTAACCTCTCAGCAAGTATAGCCATGCTTCGGAGAGACTGCATAGCTTCGGATGAAAGGATTAAGAAGCTGAGAATGCTTGTAGCGGCTCTGAGGAAAGAAGCACAATTTAAAGACGAAGTCCACAAGGCACAACAGGAAGAATTAAAGCGCCTTAGGGAAAAAACTATTCTTTCAGGGAACTATCCTCCTTATGGTAGGCGCTCCTCCCTCTGA

Predicted protein sequences of Glyma02g09162

Limit To All Plant Sequences

>Glyma02g09162.1   sequence type=predicted peptide   gene model=Glyma02g09162   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPFNMHMMRILANRQFASPLKEMKIRYIIMWKKVQRLRIKSANLSASIAMLRRDCIASDERIKKLRMLVAALRKEAQFKDEVHKAQQEELKRLREKTILSGNYPPYGRRSSL*

>Glyma02g09162.2   sequence type=predicted peptide   gene model=Glyma02g09162   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIRYIIMWKKVQRLRIKSANLSASIAMLRRDCIASDERIKKLRMLVAALRKEAQFKDEVHKAQQEELKRLREKTILSGNYPPYGRRSSL*

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