SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g09110

Feature Type:gene_model
Chromosome:Gm02
Start:7090104
stop:7090823
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g09110
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G43660AT Annotation by Michelle Graham. TAIR10: Vacuolar iron transporter (VIT) family protein | chr3:15565332-15565928 FORWARD LENGTH=198 SoyBaseE_val: 4.00E-96ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4473 KOG Uncharacterized membrane protein JGI ISS
PF01988PFAM VIT family JGI ISS
UniRef100_G7ID02UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nodulin-like protein n=1 Tax=Medicago truncatula RepID=G7ID02_MEDTR SoyBaseE_val: 1.00E-107ISS
UniRef100_I1JDF4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDF4_SOYBN SoyBaseE_val: 2.00E-172ISS

Expression Patterns of Glyma02g09110
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g09110
ParalogEvidenceComments
Glyma16g28340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g09110 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g082500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g09110
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g09110
>Glyma02g09110.1   sequence type=CDS   gene model=Glyma02g09110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCAAATCAAGCATCCCTTAACCTTAGCCAAGCCAAATTTGTCCTTCCAACCAATAATGACCTTGAGCAACAGCAACAACAACAACAACAAGCAACAACAACTCTAGAGATTGAAGCTGATCATGAGGATATCTTTGACTACTCAAAAAGATCTCAATGGCTCCGCGCTGCGGTTTTGGGAGCCAATGATGGGTTGGTCTCAACAGCATCAATCATGATGGGTGTTGGAGCAGTGAAGCATGACATCAAGGCCATGATCTTATCAGGGTTTGCAGGGTTGGTGGCAGGAGCATGTAGCATGGCCATAGGTGAGTTTGTGTCAGTTTACTCACAACTAGACATTGAGGTTGCTCAAAGGAAGAGAGAAAAGGAAAGGGGACAAAGTAGAGGGAGAGATATTCAAGAGGAAGACACCAATTATGAAGAGAAAGATAGTTTGCCAAACCCTTTGCAAGCAGCAGCAGCATCAGCTTTGGCCTTTTCTGTTGGTGCAATGGTGCCATTGCTTGCAGCATCATTTATAAGGGAATATAAGGTGAGGCTTGGAGTGATTGTTGCTGCTGTGACTTTTGCTTTGGTGGTGTTTGGTTGGTTAGGGGCTCTGTGGGGTAAGGCTCCAGTATTGAGGTCTGCTTTGAGGGTCTTGTTTGGGGGTTGGATGGCCATGGCAATGACTTTTGGGCTAACCAAGTTGATTGGATCAAGTGCACTTTAG
Predicted protein sequences of Glyma02g09110
>Glyma02g09110.1   sequence type=predicted peptide   gene model=Glyma02g09110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSNQASLNLSQAKFVLPTNNDLEQQQQQQQQATTTLEIEADHEDIFDYSKRSQWLRAAVLGANDGLVSTASIMMGVGAVKHDIKAMILSGFAGLVAGACSMAIGEFVSVYSQLDIEVAQRKREKERGQSRGRDIQEEDTNYEEKDSLPNPLQAAAASALAFSVGAMVPLLAASFIREYKVRLGVIVAAVTFALVVFGWLGALWGKAPVLRSALRVLFGGWMAMAMTFGLTKLIGSSAL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo