Glyma02g08890 - SoyBase

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Report for Sequence Feature Glyma02g08890

Feature Type:	gene_model
Chromosome:	Gm02
Start:	6881087
stop:	6881308
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g08890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G05070	AT	Annotation by Michelle Graham. TAIR10: photosystem II light harvesting complex gene 2.2 \| chr2:1799436-1800329 REVERSE LENGTH=265	SoyBase	E_val: 2.00E-32	ISS
GO:0009765	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030076	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: light-harvesting complex	SoyBase	N/A	ISS
GO:0016168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding	SoyBase	N/A	ISS
PTHR21649	Panther	CHLOROPHYLL A/B BINDING PROTEIN	JGI		ISS
PF00504	PFAM	Chlorophyll A-B binding protein	JGI		ISS
UniRef100_B5KUR9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast light-harvesting chlorophyll a/b-binding protein (Fragment) n=1 Tax=Helianthus annuus RepID=B5KUR9_HELAN	SoyBase	E_val: 4.00E-36	ISS
UniRef100_UPI0002337487	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337487 related cluster n=1 Tax=unknown RepID=UPI0002337487	SoyBase	E_val: 2.00E-45	ISS

Expression Patterns of Glyma02g08890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g08890 not represented in the dataset	Glyma02g08890 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g08890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma02g08890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g08890

Limit To All Plant Sequences

>Glyma02g08890.1   sequence type=CDS   gene model=Glyma02g08890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGCCGGTGGGCCTCTTGGTGAGGTGATTGACCCAATTTACCTAGAGGGCAGCATTGACCCATTGGGTCTTGCTGATGACCCAGAGGTTTTTGCCGAGTTGAAGGTGAAAGAGTTCAAGAATCGTAGGTTGGCTATGTTCTCCATGTTTGGATTTTTTGTTCAGGCCATTGTAACCGGAAAGGGATCTTTAGAGAACCTTACTAATCACCTTGCTAATCCA

Predicted protein sequences of Glyma02g08890

Limit To All Plant Sequences

>Glyma02g08890.1   sequence type=predicted peptide   gene model=Glyma02g08890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IAGGPLGEVIDPIYLEGSIDPLGLADDPEVFAELKVKEFKNRRLAMFSMFGFFVQAIVTGKGSLENLTNHLANP

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