SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G76730 | AT | Annotation by Michelle Graham. TAIR10: NagB/RpiA/CoA transferase-like superfamily protein | chr1:28803033-28804703 REVERSE LENGTH=354 | SoyBase | E_val: 4.00E-158 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound biosynthetic process | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| PTHR13017 | Panther | 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED | JGI | ISS | |
| PF01812 | PFAM | 5-formyltetrahydrofolate cyclo-ligase family | JGI | ISS | |
| UniRef100_B9SE88 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SE88_RICCO | SoyBase | E_val: 1.00E-164 | ISS |
| UniRef100_I1JDD1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JDD1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g08860 not represented in the dataset |
Glyma02g08860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g27960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g080400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g08860.2 sequence type=CDS gene model=Glyma02g08860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGGTTCAAGGTGGAAGCCGCCGCCGGCAGCCAGAAGAACAACAGCAACAAGGCCTTCGATGCGGCGGCGTTCGAGGCGGAGCGGTTGGCCCTCGACGCGGAGTCCCGGCGAGCCATGGCGGAGGCTGCCTACCCCAAGGCCTGGAAATGGGTAATCCGTAAGAGAATATGGGATGTGATGGAAGCTCGCAACTTCGCCAACAACCCCCGGCCCGTTCACCACCGCATTCCCAATTTCGTTGGCGCCTCTGTTGCGGCTGAAAAGATGAGGGAGCTAGATGTGTTTCAGGTAGCACAATGTGTAAAGGTTAATCCAGACTCTCCTCAGAAACAAGTCAGGTTTCTCACTCTTTCAGATGGCAAGAAGTTGTTGACTCCTCAACCTCGGCCGAGAACAGGTTTCTTCTCTGTACTTGATTCCAATATGTTAACTTTGGATACCATCAAGGAAGCCTGCACTTCTGTTGGGGTTGCCAAGCATGGACAGCCGATTGGGTTAGACAAAAAGATAAAGGTAGATCTTATTGTTATTGGATCTGTTGCTGTTGACCCAAGGACAGTGCAGGGAATTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACCAGTTGTTACCTCTGTGCATGACTGCCAATTGGTGGACGATATTCCTGTTGAAAAGCTGTTAATCCATGACGTACCAGTGGATATCATTTGTACTCCAACACAGGTCATTTTCACAAATACATTTATGCCAAAGCCTCAACCCTTGCAAAGATGTAATTTGTGCACAAGAATTTATTGGGACAAGTTGTCTCCTGAGAAGTTGGGACAAATTCGTATACTGAGGGAGTTCAAGAAGAGGATTGAACAAGAGACTGGACAGAAGCTTCCTACTGGTCCATCAGAGAAATTACCCCCTATTGCTCAACGAAGTAGAAGGGGTTGA
>Glyma02g08860.2 sequence type=predicted peptide gene model=Glyma02g08860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high WFKVEAAAGSQKNNSNKAFDAAAFEAERLALDAESRRAMAEAAYPKAWKWVIRKRIWDVMEARNFANNPRPVHHRIPNFVGASVAAEKMRELDVFQVAQCVKVNPDSPQKQVRFLTLSDGKKLLTPQPRPRTGFFSVLDSNMLTLDTIKEACTSVGVAKHGQPIGLDKKIKVDLIVIGSVAVDPRTVQGIAELEYGMLRYMGAIDDSTPVVTSVHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTFMPKPQPLQRCNLCTRIYWDKLSPEKLGQIRILREFKKRIEQETGQKLPTGPSEKLPPIAQRSRRG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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