Glyma02g08550 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma02g08550): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma02g08550): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma02g08550

Feature Type:	gene_model
Chromosome:	Gm02
Start:	6664373
stop:	6672476
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g08550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G09730	AT	Annotation by Michelle Graham. TAIR10: RH39 \| chr4:6136333-6139510 FORWARD LENGTH=621	SoyBase	E_val: 0	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006399	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0080158	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast ribulose bisphosphate carboxylase complex biogenesis	SoyBase	N/A	ISS
GO:1901259	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast rRNA processing	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0070180	GO-mf	Annotation by Michelle Graham. GO Molecular Function: LSU rRNA binding	SoyBase	N/A	ISS
KOG0331	KOG	ATP-dependent RNA helicase	JGI		ISS
PTHR24031	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24031:SF115	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_G7ZYN1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DEAD-box ATP-dependent RNA helicase n=1 Tax=Medicago truncatula RepID=G7ZYN1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JDA7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDA7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g08550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g08550 not represented in the dataset	Glyma02g08550 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g08550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g078100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g08550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g08550

Limit To All Plant Sequences

>Glyma02g08550.1   sequence type=CDS   gene model=Glyma02g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTTCTAAAAACCCCACTCTGTTATCTCAACCTAAACCTCCCAAACACCCCATCCATGGCGGGAGCAACAGGCAGAACCCTCTTCACCCTCTCCCTCTCTTCCTCCTCTTCCCTCACGCGCCTCTCTCTCATCCCCAAGCGCGTCCCACTCCCCAAACCCCTCCCCCTCTTCCGCCGCTTCCGCCCTCTCTGCTCCGTCTCCGCCGCCGCGCCGGAAGCTGCCGACGCGAAGCACTCAATACTCCTCGAGAGGCTCCGGTCCCGACACCTCCGTGACGCCGCGAAGGCCGCCCCCGAACCGAGGAAGAAGGAGAAGGTCGCCGCCGCAGCCGCAGCCGCCGCCGCCGCCGCCGAAGCGAAGGAGAAGAAGAAGGCGGTTGCGAGCTTCGAGGAGCTGGGACTGAGTGAGGAGGTCATGGGGGCTGTTAGGGAAATGGGAATTGAAGTTCCCACTGAGATACAGAGCATTGGCATCCCTGCCGTTTTGGAAGAGAAGAGCGTCGTTTTGGGGTCGCACACTGGCTCTGGCAAAACCCTCGCTTACTTGCTTCCCCTTGCTCAGTTGTTAAGACGGGACGAACAATTGAATGGAATACTGTTGAAGCCCAGGCGTCCACGAGCTGTTGTGCTGTGTCCTACGAGGGAGTTATCCGAGCAGGTTTTTCGAGTTGCAAAATCGATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGGCTTAGGCCTCAGGAGGATTCACTTAATAACCCCATTGATGTGGTAGTTGGTACCCCTGGCAGGGTTCTTCAACATATTGAGGAGGGAAATATGGTATATGGTGACATCAAATACTTGGTTTTGGATGAGGCGGACACAATGTTTGATCGGGGCTTTGGTCCTGATATACGCAAATTTATAGGCCCATTAAAAAATCGTGCTTCAAAACCTGATGGCCTAGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAAATCTGATTGATGAGGAGTTTCTAGGCATTGTTCATCTGCGCACGTCAACATTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTATTAAACTTGCAGGTTCTGAGAACAAGCTTGAAGCATTACTTCAGGTACTAGAGCCAAGCCTAGCAAAAGGGAATAGGGTGATGGTTTTCTGCAATACATTGGATTCAAGTCGTGCTGTGGATCATTTTCTTGGTGAAAATCAGATTTCTGCTGTGAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTCAAGAGTGATGGTGATGATTGTCCTACATTGGTTTGCACGGACTTGGCTGCTAGGGGTCTAGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCCATTGACTACCTTCATCGCACTGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAAAAAGGACTTGGACTTGGCCAGCAAAATAGAGGACGCATTAAGGAAGAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTCCGAAGGGACATTGCAAGGACCCAAAATCAAAGCACTGAGAAGGGAAAGAGCAAAAGATTGGTTAAAGTTTCAAAAGTTATGGGCAAATCTGGTAGTCGTTTTGGTTCTGGGAATAATGGATCAGGTATGAAATCTGGTAAAGGGTCACCAGTCAAATCTATGAAGAAAGGGATTCAAGTTTCAAAATCTGGAAAATCTTCTAGTGCAAATAGCTTAAGAAAAGCTTCTACAGAGAAGAGGCAATCAAGTAAAATGGTCAGTGCCACCAAATCTACGAATTCTAAACTCAATGTTGTGGGGTTTAGGGGGAAAAATTCGTCTTCAAATAATAAAGAATCGGGTTTGTGA

Predicted protein sequences of Glyma02g08550

Limit To All Plant Sequences

>Glyma02g08550.1   sequence type=predicted peptide   gene model=Glyma02g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLLKTPLCYLNLNLPNTPSMAGATGRTLFTLSLSSSSSLTRLSLIPKRVPLPKPLPLFRRFRPLCSVSAAAPEAADAKHSILLERLRSRHLRDAAKAAPEPRKKEKVAAAAAAAAAAAEAKEKKKAVASFEELGLSEEVMGAVREMGIEVPTEIQSIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLAQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDVVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFIGPLKNRASKPDGLGFQTILVTATMTKAVQNLIDEEFLGIVHLRTSTLHKKISSARHDFIKLAGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISAVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLDLASKIEDALRKNESLEAITKESVRRDIARTQNQSTEKGKSKRLVKVSKVMGKSGSRFGSGNNGSGMKSGKGSPVKSMKKGIQVSKSGKSSSANSLRKASTEKRQSSKMVSATKSTNSKLNVVGFRGKNSSSNNKESGL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain