Glyma02g08540 - SoyBase

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Report for Sequence Feature Glyma02g08540

Feature Type:	gene_model
Chromosome:	Gm02
Start:	6659617
stop:	6661523
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g08540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77750	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S13/S18 family \| chr1:29230346-29231490 REVERSE LENGTH=154	SoyBase	E_val: 6.00E-35	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005763	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial small ribosomal subunit	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0015935	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3311	KOG	Ribosomal protein S18	JGI		ISS
PTHR10871	Panther	30S/40S RIBOSOMAL PROTEIN	JGI		ISS
PTHR10871:SF1	Panther	30S RIBOSOMAL PROTEIN S13	JGI		ISS
PF00416	PFAM	Ribosomal protein S13/S18	JGI		ISS
UniRef100_Q8LPW2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Small ribosomal subunit protein S13, mitochondrial n=1 Tax=Glycine max RepID=RT13_SOYBN	SoyBase	E_val: 5.00E-101	ISS
UniRef100_Q8LPW2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Small ribosomal subunit protein S13, mitochondrial n=1 Tax=Glycine max RepID=RT13_SOYBN	SoyBase	E_val: 5.00E-101	ISS

Expression Patterns of Glyma02g08540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g08540 not represented in the dataset	Glyma02g08540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g08540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g078000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g08540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g08540

Limit To All Plant Sequences

>Glyma02g08540.4   sequence type=transcript   gene model=Glyma02g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAGTAAAACATTTTTGTTTTTCAAAAACAACTAAATTCTCGTTTTATTTTAGAAAAATAGTTAATTAATTCTTTAATTTTTGGTGCTCCATCTCCCACTTCCCATAGAGGCATCACCAATTCACCATCCAAAAAGGAACAAACCGCAAAGTTGGAAAACCTACATACATTGCTCGCAAGTAGCATCTGCAAATCTTCCAACTCCACCATGTTCGGTTCCGCACGAATCCTCTCCGACGTCACTCTCCGCCTCCGTCAAAACCTTTCGGTTCACGGTGTGCGCGTGCAGAACATAAACATCGGAGGCGGTGTGGGAGGCGAGATCCCGGACAACAAGCGTCTGGTGTACGCTCTTCAGAACCTCCACGGAATAGGCCGTTCCAAGGCGCAACACATCGTCGCCGAGCTCGGCGTCGAGAACAAATTCGTCAAGGACCTTAGCAAGAGAGAACTCTATTCCATTCGTGAATTGCTCTCCAAGTATCTCATCGGAAATGATTTGAAAAAGTGTGTTGAGAGAGATGTGGGAAGGTTGGTGGGCATTCAGTGCTACCGAGGGATTAGACATGTTGATAGCTTGCCATGCCGCGGACAGAGGACTCATACAAATGCACGCACCAGGAGGAGCCGGAAAACTTTCTCCGGATCCAGATAGGTTTCTTATGTGTTGGAGTCAGCTTCACTTATAATATGGAATGCACATTTGCTGGACCAGTGAGTTCCCAATATTCAAGTTTCTTGAGTGCAGTGCAATTTTCCACTATATTTTCCCAATTTGTTGCTATTCCAAGGCTCAATTATTTTGCACTCTTTTGTCTTTAATTTTGTGAAATGCACTGAAGTTATTGCGATGGAATGTGTTGGTAGGTTGGACCATTGATGTTTAATGATAAATGAAAACAATCCAAGCTACTAACTTATGAAATGTGGCAGAGGATGGTGTTAATGTATCAAGCTAGAAAAAAAATTCAACTTTTATGCTTTCTAGATTTTGAAAGATGCTGAGACGTGGTTGCCAAATAATTTTTTGTAGCACACAAGTTTGAGTTCTGATGGGAGGGAGGAGGGGAAGGGGAAGGGGTGTAAGGAGAGGGACTTCTTGTTTGGTTTGTAAGGGAATGGAAATAAATAATTTATTATT

>Glyma02g08540.5   sequence type=transcript   gene model=Glyma02g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATCTCCCACTTCCCATAGAGGCATCACCAATTCACCATCCAAAAAGGAACAAACCGCAAAGTTGGAAAACCTACATACATTGCTCGCAAGTAGCATCTGCAAATCTTCCAACTCCACCATGTTCGGTTCCGCACGAATCCTCTCCGACGTCACTCTCCGCCTCCGTCAAAACCTTTCGGTTCACGGTGTGCGCGTGCAGAACATAAACATCGGAGGCGGTGTGGGAGGCGAGATCCCGGACAACAAGCGTCTGGTGTACGCTCTTCAGAACCTCCACGGAATAGGCCGTTCCAAGGCGCAACACATCGTCGCCGAGCTCGGCGTCGAGAACAAATTCGTCAAGGACCTTAGCAAGAGAGAACTCTATTCCATTCGTGAATTGCTCTCCAAGTATCTCATCGGAAATGATTTGAAAAAGTGTGTTGAGAGAGATGTGGGAAGGTTGGTGGGCATTCAGTGCTACCGAGGGATTAGACATGTTGATAGCTTGCCATGCCGCGGACAGAGGACTCATACAAATGCACGCACCAGGAGGAGCCGGAAAACTTTCTCCGGATCCAGATAGGTACTGCTCGAGAAACAGATTAATGTTTCTTATGTGTTGGAGTCAGCTTCACTTATAATATGGAATGCACATTTGCTGGACCAGTGAGTTCCCAATATTCAAGTTTCTTGAGTGCAGTGCAATTTTCCACTATATTTTCCCAATTTGTTGCTATTCCAAGGCTCAATTATTTTGCACTCTTTTGTCTTTAATTTTGTGAAATGCACTGAAGTTATTGCGATGGAATGTGTTGGTAGGTTGGACCATTGATGTTTAATGATAAATGAAAACAATCCAAGCTACTAACTTATGAAATGTGGCAGAGGATGGTGTTAATGTATCAAGCTAGAAAAAAAATTCAACTTTTATGCTTTCT

Coding sequences of Glyma02g08540

Limit To All Plant Sequences

>Glyma02g08540.3   sequence type=CDS   gene model=Glyma02g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCGGTTCCGCACGAATCCTCTCCGACGTCACTCTCCGCCTCCGTCAAAACCTTTCGGTTCACGGTGTGCGCGTGCAGAACATAAACATCGGAGGCGGTGTGGGAGGCGAGATCCCGGACAACAAGCGTCTGGTGTACGCTCTTCAGAACCTCCACGGAATAGGCCGTTCCAAGGCGCAACACATCGTCGCCGAGCTCGGCGTCGAGAACAAATTCGTCAAGGACCTTAGCAAGAGAGAACTCTATTCCATTCGTGAATTGCTCTCCAAGTATCTCATCGGAAATGATTTGAAAAAGTGTGTTGAGAGAGATGTGGGAAGGTTGGTGGGCATTCAGTGCTACCGAGGGATTAGACATGTTGATAGCTTGCCATGCCGCGGACAGAGGACTCATACAAATGCACGCACCAGGAGGAGCCGGAAAACTTTCTCCGGATCCAGATAG

>Glyma02g08540.4   sequence type=CDS   gene model=Glyma02g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCGGTTCCGCACGAATCCTCTCCGACGTCACTCTCCGCCTCCGTCAAAACCTTTCGGTTCACGGTGTGCGCGTGCAGAACATAAACATCGGAGGCGGTGTGGGAGGCGAGATCCCGGACAACAAGCGTCTGGTGTACGCTCTTCAGAACCTCCACGGAATAGGCCGTTCCAAGGCGCAACACATCGTCGCCGAGCTCGGCGTCGAGAACAAATTCGTCAAGGACCTTAGCAAGAGAGAACTCTATTCCATTCGTGAATTGCTCTCCAAGTATCTCATCGGAAATGATTTGAAAAAGTGTGTTGAGAGAGATGTGGGAAGGTTGGTGGGCATTCAGTGCTACCGAGGGATTAGACATGTTGATAGCTTGCCATGCCGCGGACAGAGGACTCATACAAATGCACGCACCAGGAGGAGCCGGAAAACTTTCTCCGGATCCAGATAG

>Glyma02g08540.5   sequence type=CDS   gene model=Glyma02g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCGGTTCCGCACGAATCCTCTCCGACGTCACTCTCCGCCTCCGTCAAAACCTTTCGGTTCACGGTGTGCGCGTGCAGAACATAAACATCGGAGGCGGTGTGGGAGGCGAGATCCCGGACAACAAGCGTCTGGTGTACGCTCTTCAGAACCTCCACGGAATAGGCCGTTCCAAGGCGCAACACATCGTCGCCGAGCTCGGCGTCGAGAACAAATTCGTCAAGGACCTTAGCAAGAGAGAACTCTATTCCATTCGTGAATTGCTCTCCAAGTATCTCATCGGAAATGATTTGAAAAAGTGTGTTGAGAGAGATGTGGGAAGGTTGGTGGGCATTCAGTGCTACCGAGGGATTAGACATGTTGATAGCTTGCCATGCCGCGGACAGAGGACTCATACAAATGCACGCACCAGGAGGAGCCGGAAAACTTTCTCCGGATCCAGATAG

Predicted protein sequences of Glyma02g08540

Limit To All Plant Sequences

>Glyma02g08540.3   sequence type=predicted peptide   gene model=Glyma02g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGSARILSDVTLRLRQNLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRKTFSGSR*

>Glyma02g08540.4   sequence type=predicted peptide   gene model=Glyma02g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGSARILSDVTLRLRQNLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRKTFSGSR*

>Glyma02g08540.5   sequence type=predicted peptide   gene model=Glyma02g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGSARILSDVTLRLRQNLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRKTFSGSR*

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