SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G09730 | AT | Annotation by Michelle Graham. TAIR10: RH39 | chr4:6136333-6139510 FORWARD LENGTH=621 | SoyBase | E_val: 4.00E-48 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006399 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0080158 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast ribulose bisphosphate carboxylase complex biogenesis | SoyBase | N/A | ISS |
| GO:1901259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast rRNA processing | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0070180 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: LSU rRNA binding | SoyBase | N/A | ISS |
| PTHR24031 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24031:SF115 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00658 | PFAM | Poly-adenylate binding protein, unique domain | JGI | ISS | |
| UniRef100_G7ZYP3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent RNA helicase n=1 Tax=Medicago truncatula RepID=G7ZYP3_MEDTR | SoyBase | E_val: 3.00E-87 | ISS |
| UniRef100_I1JDA5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDA5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g08510 not represented in the dataset |
Glyma02g08510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g27680 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g077700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g08510.1 sequence type=CDS gene model=Glyma02g08510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAAGAAGACTACGAGAGCTTCTTAGCCTCTGTTTTTCTCTAAAGCACAAACCTTTAGCAAAATCAGCACCACCACCCACTTCTTTCTTACAAAGTAGCATCACATTCTCAACCTCTTCCTCCTCCGCAACCCCTCCCATCGAAGAACCAAAGACTTCAACTTCGTCATCCAAGTCCCAAAGGGACTCGCTAATTTTCGAACAGTTCAAGCAAAGAAAACTCAAAGGGTCTCCAAAAGACTCAAAGGGTACCCCTCAAGTGTGTTCAACTTCAGTGCCACTAAGTTCTGATGCTGACACTGAAAAGGTGGTTCAAAAGGGTGTGCGGAATGAGAATGACCCCACCTTGGTGGTTAGAGGCTTCAAGGAGTTGGGGGTGAGTGAGGAGCTTGTTGAGGTGATGGAAGGGATTGGTGAGTTTGTTCCTACTGAGATACAGTGTGTGGCTATTCCTGCTGTTTTGGAAGGGAAGAGTGTGCTGTTGAGTTCACCATCTGAACCTGACAGAACCTTGGCCTTCTTGTTGCCACTTATTCAGCTGCTAAGACGGGATGGAGGGTTGCTTGGTTCGAATTCAAAGTATCCACAAGCCATCGTGCTTTGTGCTACAGAGGAGAAAAGTGAGCAGTGCTTTAATGCTGCAAAATATATCATCCATAATGCAGAATTGAAGTCTGCAAAGGATAGTGCTTCACCAGATAACGGGCAGTCAAAGGCCTCAATTGGCCTCATGATTGGGACTCCTAGTGAGATTCTTGAATACATTGAAGAGGGGAGTGTTGTTCCTGCTGAAATAAGATACTTGGTGTTGGATGAGGCCGATTGCATGCTTGGTAGTGGCCTTGGTCCTGAGATCCATAAAATTCTGAGACCATTACAAGATCAAGAATCAAAATCTTGTGTTAAAAGATTACAAACTATTTTGGCAATTTCAACAATAGCTGAGGTTTTGGGTGAACAATCCTCCGTTGTAAAGCATCTTGAGTGCGATCATGCAGGAAATATTTCTGCAATGTCTCTAGAAATGGAACAAACAGAAGTATTTCATTTCACAGAGTCTCTTGACGCTCTTAGGAAAAAAGTGGCAGAGGCCATGGATTCCCTTTTGAAACAACAGTGA
>Glyma02g08510.1 sequence type=predicted peptide gene model=Glyma02g08510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRRRLRELLSLCFSLKHKPLAKSAPPPTSFLQSSITFSTSSSSATPPIEEPKTSTSSSKSQRDSLIFEQFKQRKLKGSPKDSKGTPQVCSTSVPLSSDADTEKVVQKGVRNENDPTLVVRGFKELGVSEELVEVMEGIGEFVPTEIQCVAIPAVLEGKSVLLSSPSEPDRTLAFLLPLIQLLRRDGGLLGSNSKYPQAIVLCATEEKSEQCFNAAKYIIHNAELKSAKDSASPDNGQSKASIGLMIGTPSEILEYIEEGSVVPAEIRYLVLDEADCMLGSGLGPEIHKILRPLQDQESKSCVKRLQTILAISTIAEVLGEQSSVVKHLECDHAGNISAMSLEMEQTEVFHFTESLDALRKKVAEAMDSLLKQQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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