SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71770 | AT | Annotation by Michelle Graham. TAIR10: poly(A)-binding protein 5 | chr1:26990777-26993489 REVERSE LENGTH=682 | SoyBase | E_val: 0 | ISS |
| GO:0000289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA poly(A) tail shortening | SoyBase | N/A | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| GO:0008143 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: poly(A) RNA binding | SoyBase | N/A | ISS |
| KOG0123 | KOG | Polyadenylate-binding protein (RRM superfamily) | JGI | ISS | |
| PTHR24011 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24011:SF69 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF00658 | PFAM | Poly-adenylate binding protein, unique domain | JGI | ISS | |
| UniRef100_B9SM76 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polyadenylate-binding protein, putative n=1 Tax=Ricinus communis RepID=B9SM76_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233747B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233747B related cluster n=1 Tax=unknown RepID=UPI000233747B | SoyBase | E_val: 0 | ISS |
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Glyma02g08480 not represented in the dataset |
Glyma02g08480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g077400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g08480.1 sequence type=CDS gene model=Glyma02g08480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCGGCGATGGTTCCAGCAGGAGCATTGAACGGTATGCAATCTGGGAATGCCTCTTTGTACGTTGGTGATCTTGAAAGGAACGTTGACGAGGCGCAGCTGTTTCAACTGTTTGCCCGAGTGGGCCCAATATTTTCAATTAGAGTTTGTAGGGATGAGACAAACCGATCTCTTGGATATGCTTATGTTAACTTTGTCAACCCACAGGATGCTGCTAATGCCATGGAGCATCTGAATTTCACTCCTCTGAATGGAAAATCCATTCGTGTTATGTTTTCTAACCGAGATCCTAGCATTCGAAAAAGTGGATATGCAAATGTGTTTATCAAGAACCTTGACATATCAATAGATAACAAGACATTGCATGACACTTTTGCTGCCTTTGGATTTGTACTCTCTAGTAAGGTAGCCGTTGATAGCATTGGTCAGTCGAAAGGGTATGGATTTGTGCAATTTGACAATGAAGAGTCTGCGCAAAATGCTATCAAAGAGTTGAATGGCATGTTGATAAATGATAAAAAAGTCTATGTTGGACTCTTTGTTAATCGCCAGGAAAGGGCTCAGGTAGATGGATCACCAAAGTTCACCAATGTGTATGTGAAAAACTTTTCCGAAACATATACTGATGAAGATCTTGAGCAGCTCTTTAGCACCTATGGTACAATAACTAGTGCTGTGGTCATGAAAGACACAGATGGAAAATCTAGATGTTTTGGTTTTGTGAATTTCGAAAGTCCAGATTCAGCGGTTGCTGCGGTTGAAAGGTTAAACGGAACCACAGTCAATGATGATAAGGTTTTATATGTAGGGAGAGCTCAAAGAAAAGCAGAAAGAGAGGCGGAGTTGAAAGCCAGATTTGAGTTGGAAAGAATAAGGAAATATGAAAAATACCATGGTACTAATTTGTACGTGAAAAACCTTGACTATAATATCAATGATGACAAATTGAAGGAGCTGTTTTCTGAGTTTGGAACAATAACATCTTGCAAGGTGATGCTTGAACCGAATGGGCGTAGCAAGGGTTATGGTTTTGTTGCCTTTTCTGCTCCTCGGAATGCAAATAGAGCCTTGCATGAAATGAATGGAAAGATGATTGGACGGAGGCCCCTATATGTAGCTGTGGCCCAACGCAAAGAAGAGAGGAAGGCTCTTTTGGAGGCTCAATTTTCTCAAATGCATGCCCTATATGCAATCACGCATTTACCTACGGGAATCCCTGTATATCATCCAGGGGCACCAAGACATGGCCCTCAAGCATTGCATTATGGTCAAGGGGCACCAAGTCTTGTAGCACCTCAACCAACAGGATATGGTTTCCAGCAGCAGCTCTTGCCGGGCATGCATCCTGGTGTTGCTCCAAATTTCATCATGCCATACCACCGCCAGAGACAGGTTCCTCCAAGACTTAGAAATCTCCACCGGAACCAGATGTTGCATCTTAACTCCAGCCAAGGGTTTGGATACATGGGAAATGGTCAAAATGGCATGGATCCGTCAGTAGTTCCCCATGGTATAGTGGCTCCAATGATGCCATTGCCCTTTGATGGTTCAGGAATTTCCGCAGCTCCTACTTATAATCAGCATCCTGGTGGTTCATTGTCCAACACATTTGCCTCAGCTCTGGCTTCTGCTACCCCAGAAAATCAGCACCTGATGCTAGCTGAACATCTATATCCACTTGTGGACGAAATTACTAAAAATCATCATCAGACTGAAAAGGTGACAGGAATGTTGTTGGAAATGGATCAGTCGGAGGTCATCCATCTGACTGAGTCTCCCGAGGACTTGAAAATAAAGGTGTTTGAGGCAATGCAGGCCCTTGGTGAAGCCGCACCAGATTCTGAAGAAGTTGGTGATCAACTTGGCTCAGTCTCATTGAAGGAATGA
>Glyma02g08480.1 sequence type=predicted peptide gene model=Glyma02g08480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAAMVPAGALNGMQSGNASLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAMEHLNFTPLNGKSIRVMFSNRDPSIRKSGYANVFIKNLDISIDNKTLHDTFAAFGFVLSSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQERAQVDGSPKFTNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVERLNGTTVNDDKVLYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNINDDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMNGKMIGRRPLYVAVAQRKEERKALLEAQFSQMHALYAITHLPTGIPVYHPGAPRHGPQALHYGQGAPSLVAPQPTGYGFQQQLLPGMHPGVAPNFIMPYHRQRQVPPRLRNLHRNQMLHLNSSQGFGYMGNGQNGMDPSVVPHGIVAPMMPLPFDGSGISAAPTYNQHPGGSLSNTFASALASATPENQHLMLAEHLYPLVDEITKNHHQTEKVTGMLLEMDQSEVIHLTESPEDLKIKVFEAMQALGEAAPDSEEVGDQLGSVSLKE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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