Glyma02g08360 - SoyBase

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Report for Sequence Feature Glyma02g08360

Feature Type:	gene_model
Chromosome:	Gm02
Start:	6568673
stop:	6575623
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g08360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G71830	AT	Annotation by Michelle Graham. TAIR10: somatic embryogenesis receptor-like kinase 1 \| chr1:27018575-27021842 FORWARD LENGTH=625	SoyBase	E_val: 0	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0009556	GO-bp	Annotation by Michelle Graham. GO Biological Process: microsporogenesis	SoyBase	N/A	ISS
GO:0009742	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009880	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification	SoyBase	N/A	ISS
GO:0010072	GO-bp	Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification	SoyBase	N/A	ISS
GO:0010152	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen maturation	SoyBase	N/A	ISS
GO:0010227	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ abscission	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010431	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed maturation	SoyBase	N/A	ISS
GO:0016310	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorylation	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0045595	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004675	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0033612	GO-mf	Annotation by Michelle Graham. GO Molecular Function: receptor serine/threonine kinase binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF351	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_C6ZGA8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Somatic embryogenesis receptor kinase n=2 Tax=Glycine max RepID=C6ZGA8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337A34	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337A34 related cluster n=1 Tax=unknown RepID=UPI0002337A34	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g08360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g08360 not represented in the dataset	Glyma02g08360 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g08360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g076100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g08360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g08360

Limit To All Plant Sequences

>Glyma02g08360.2   sequence type=transcript   gene model=Glyma02g08360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTTCGGGCAGCCTCACTCTCACTCTCAGCAAGCAGCACGCCTCACTCAAAACATTCACTGATAAATACACAAACAGAAAAATGAAAATAAAAATAATAGTGTTCTCTTTCTGAACCAAGAGAGAAAAAGTTAAAAGCAAAATGTTTATTTTATTTTATATTTTCAACTTAGAAAAACAAGAATGTGGGAAAGTGTCATTATTTTTTTCTTGATTTTTTTTTTTTTTTTTGGGAGGTGATTTTGGAATAGGCGTGTTTTGATGAGATCGGGTTCTGGGTGTGGTGTTGGTTACTTGCATGTGAGATTTTTTGGGGGGTTAGAGTTTTGTGGCATTTTGGGTTTTTGAGGAGAATAAGGTTTGGGTTTTTGTGATGGTGTGTTGGGGGGTGAGGTATCATTTGGATCTGAGGTTTGTTCTGGTGACTTAGTTTTTTGATGGAGAGAGAGTTGTGGGGTTCTGTTTTCATCTATTGGGTGTTATTAGCTCGCCCATTATGGTTGGTTTCTGCTAACATGGAAGGTGACGCCTTACATAGCCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACACTGGTCAATCCATGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTTGATCTGGGAAATGCTGTTTTGTCTGGTCAACTTGTTCCACAGCTTGGTCAGCTCAAAAACTTACAGTATTTCAATAACATTAGTGGACCAATTCCAAATGACCTGGGGAATCTTACTAATTTGGTGAGCTTGGATCTGTATCTAAACCGTTTCAGTGGACCTATCCCAGAGTCATTGGGCAAGTTGTCAAAATTGCGCTTTCTCCGGCTTAACAACAACAGCCTGACTGGTCCTATTCCCATGCCACTGACTAATATTACAGCTCTCCAAGTGCTGGATTTGTCTAACAACCAACTATCAGGTGTGGTTCCCGATAATGGCTCCTTCTCATTATTCACTCCTATCAGTTTTAACAACAACTTGGACCTATGTGGCCCAGTCACTGGGCATCCTTGTCCCGGGTCTCCTCCATTTTCTCCTCCTCCCCCTTTTGTCCCACCATCCCCAATCTCAGCTCCAGAAGGAAATAGTGCCACTGGTGCAATAGCTGGAGGAGTAGCTGCAGGTGCTGCTCTGTTATTTGCTGCTCCTGCAATTGTGTTTGCTTGGTGGCGTCGAAGGAAACCACAGGAGTTTTTCTTTGATGTGCCCGCTGAAGAGGATCCTGAAGTACACCTTGGGCAGCTTAAGAGGTTCTCATTACGAGAACTGCAAGTTGCAACAGATACTTTCAGCAATAAGAACATTCTTGGAAGGGGAGGATTTGGTAAGGTTTACAAAGGACGTTTGACTGATGGTTCACTGGTTGCTGTGAAAAGATTGAAAGAGGAGCGCACGCCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATTAGCATGGCTGTGCACCGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACTCCTACTGAAAGGCTACTTGTATATCCTTACATGGCTAATGGTAGTGTTGCCTCATGCTTAAGAGAGCGTCCGGCACATCAACAACCCCTTGATTGGCCGACAAGGAAAAGAATAGCATTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTAAAAGCTGCAAACATACTGTTGGACGAGGAGTTTGAGGCTGTTGTTGGAGATTTTGGGTTGGCTAAACTGATGGACTACAAGGACACCCATGTTACAACTGCTGTACGGGGCACAATTGGGCACATAGCACCAGAGTACCTGTCTACTGGTAAATCTTCAGAGAAAACAGACGTCTTTGGGTATGGTATAATGCTTCTGGAGCTAATCACTGGACAAAGGGCTTTTGACTTGGCTCGACTTGCAAATGATGATGATGTTATGTTGCTGGATTGGGTAAAAGGACTTCTGAAAGAAAAGAAGCTAGAAATGCTGGTTGATCCTGATCTCCATAGCAATTACATAGATGCTGAGGTAGAACAGTTAATCCAGGTTGCACTGCTTTGCTCACAAGGTTCCCCTATGGACCGGCCTAAGATGTCAGAAGTGGTGCGAATGCTTGAAGGTGATGGCTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAAGTTCTGCGCCAGGAAGTGGAGTTGGCCCCTCATCCCAATTCCGATTGGATTGTTGACTCAACTGAAAATCTACATGCAGTTGAGTTATCTGGTCCAAGGTGACTTTGGCACAACAGTAAGTTAAAGGGAGAAAATAGAATTATTTATGACATTTTTTCAGCTATAATAGTTTTCTTTCACTCTTGTCCTTTCCTGATTACACGTCCTGTAAGTCAAGTCCACTGCATTGTATTCATTTACATTTGTGCATACGGGTTGCTTTCTTGAGTTACAAATTACAATATGTATCATATGCTGTAGTTTGATGAAGTGAAATTTTACTTAGATGAAGCAATTGCAGCTCAACTCTGTACACCATCTTTCATATTATTTTTTAAA

Coding sequences of Glyma02g08360

Limit To All Plant Sequences

>Glyma02g08360.1   sequence type=CDS   gene model=Glyma02g08360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGAGAGTTGTGGGGTTCTGTTTTCATCTATTGGGTGTTATTAGCTCGCCCATTATGGTTGGTTTCTGCTAACATGGAAGGTGACGCCTTACATAGCCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACACTGGTCAATCCATGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTTGATCTGGGAAATGCTGTTTTGTCTGGTCAACTTGTTCCACAGCTTGGTCAGCTCAAAAACTTACAGTATTTAGAACTTTACAGCAATAACATTAGTGGACCAATTCCAAATGACCTGGGGAATCTTACTAATTTGGTGAGCTTGGATCTGTATCTAAACCGTTTCAGTGGACCTATCCCAGAGTCATTGGGCAAGTTGTCAAAATTGCGCTTTCTCCGGCTTAACAACAACAGCCTGACTGGTCCTATTCCCATGCCACTGACTAATATTACAGCTCTCCAAGTGCTGGATTTGTCTAACAACCAACTATCAGGTGTGGTTCCCGATAATGGCTCCTTCTCATTATTCACTCCTATCAGTTTTAACAACAACTTGGACCTATGTGGCCCAGTCACTGGGCATCCTTGTCCCGGGTCTCCTCCATTTTCTCCTCCTCCCCCTTTTGTCCCACCATCCCCAATCTCAGCTCCAGAAGGAAATAGTGCCACTGGTGCAATAGCTGGAGGAGTAGCTGCAGGTGCTGCTCTGTTATTTGCTGCTCCTGCAATTGTGTTTGCTTGGTGGCGTCGAAGGAAACCACAGGAGTTTTTCTTTGATGTGCCCGCTGAAGAGGATCCTGAAGTACACCTTGGGCAGCTTAAGAGGTTCTCATTACGAGAACTGCAAGTTGCAACAGATACTTTCAGCAATAAGAACATTCTTGGAAGGGGAGGATTTGGTAAGGTTTACAAAGGACGTTTGACTGATGGTTCACTGGTTGCTGTGAAAAGATTGAAAGAGGAGCGCACGCCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATTAGCATGGCTGTGCACCGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACTCCTACTGAAAGGCTACTTGTATATCCTTACATGGCTAATGGTAGTGTTGCCTCATGCTTAAGAGAGCGTCCGGCACATCAACAACCCCTTGATTGGCCGACAAGGAAAAGAATAGCATTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTAAAAGCTGCAAACATACTGTTGGACGAGGAGTTTGAGGCTGTTGTTGGAGATTTTGGGTTGGCTAAACTGATGGACTACAAGGACACCCATGTTACAACTGCTGTACGGGGCACAATTGGGCACATAGCACCAGAGTACCTGTCTACTGGTAAATCTTCAGAGAAAACAGACGTCTTTGGGTATGGTATAATGCTTCTGGAGCTAATCACTGGACAAAGGGCTTTTGACTTGGCTCGACTTGCAAATGATGATGATGTTATGTTGCTGGATTGGGTAAAAGGACTTCTGAAAGAAAAGAAGCTAGAAATGCTGGTTGATCCTGATCTCCATAGCAATTACATAGATGCTGAGGTAGAACAGTTAATCCAGGTTGCACTGCTTTGCTCACAAGGTTCCCCTATGGACCGGCCTAAGATGTCAGAAGTGGTGCGAATGCTTGAAGGTGATGGCTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAAGTTCTGCGCCAGGAAGTGGAGTTGGCCCCTCATCCCAATTCCGATTGGATTGTTGACTCAACTGAAAATCTACATGCAGTTGAGTTATCTGGTCCAAGGTGA

>Glyma02g08360.2   sequence type=CDS   gene model=Glyma02g08360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGAGAGTTGTGGGGTTCTGTTTTCATCTATTGGGTGTTATTAGCTCGCCCATTATGGTTGGTTTCTGCTAACATGGAAGGTGACGCCTTACATAGCCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACACTGGTCAATCCATGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTTGATCTGGGAAATGCTGTTTTGTCTGGTCAACTTGTTCCACAGCTTGGTCAGCTCAAAAACTTACAGTATTTCAATAACATTAGTGGACCAATTCCAAATGACCTGGGGAATCTTACTAATTTGGTGAGCTTGGATCTGTATCTAAACCGTTTCAGTGGACCTATCCCAGAGTCATTGGGCAAGTTGTCAAAATTGCGCTTTCTCCGGCTTAACAACAACAGCCTGACTGGTCCTATTCCCATGCCACTGACTAATATTACAGCTCTCCAAGTGCTGGATTTGTCTAACAACCAACTATCAGGTGTGGTTCCCGATAATGGCTCCTTCTCATTATTCACTCCTATCAGTTTTAACAACAACTTGGACCTATGTGGCCCAGTCACTGGGCATCCTTGTCCCGGGTCTCCTCCATTTTCTCCTCCTCCCCCTTTTGTCCCACCATCCCCAATCTCAGCTCCAGAAGGAAATAGTGCCACTGGTGCAATAGCTGGAGGAGTAGCTGCAGGTGCTGCTCTGTTATTTGCTGCTCCTGCAATTGTGTTTGCTTGGTGGCGTCGAAGGAAACCACAGGAGTTTTTCTTTGATGTGCCCGCTGAAGAGGATCCTGAAGTACACCTTGGGCAGCTTAAGAGGTTCTCATTACGAGAACTGCAAGTTGCAACAGATACTTTCAGCAATAAGAACATTCTTGGAAGGGGAGGATTTGGTAAGGTTTACAAAGGACGTTTGACTGATGGTTCACTGGTTGCTGTGAAAAGATTGAAAGAGGAGCGCACGCCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATTAGCATGGCTGTGCACCGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACTCCTACTGAAAGGCTACTTGTATATCCTTACATGGCTAATGGTAGTGTTGCCTCATGCTTAAGAGAGCGTCCGGCACATCAACAACCCCTTGATTGGCCGACAAGGAAAAGAATAGCATTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTAAAAGCTGCAAACATACTGTTGGACGAGGAGTTTGAGGCTGTTGTTGGAGATTTTGGGTTGGCTAAACTGATGGACTACAAGGACACCCATGTTACAACTGCTGTACGGGGCACAATTGGGCACATAGCACCAGAGTACCTGTCTACTGGTAAATCTTCAGAGAAAACAGACGTCTTTGGGTATGGTATAATGCTTCTGGAGCTAATCACTGGACAAAGGGCTTTTGACTTGGCTCGACTTGCAAATGATGATGATGTTATGTTGCTGGATTGGGTAAAAGGACTTCTGAAAGAAAAGAAGCTAGAAATGCTGGTTGATCCTGATCTCCATAGCAATTACATAGATGCTGAGGTAGAACAGTTAATCCAGGTTGCACTGCTTTGCTCACAAGGTTCCCCTATGGACCGGCCTAAGATGTCAGAAGTGGTGCGAATGCTTGAAGGTGATGGCTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAAGTTCTGCGCCAGGAAGTGGAGTTGGCCCCTCATCCCAATTCCGATTGGATTGTTGACTCAACTGAAAATCTACATGCAGTTGAGTTATCTGGTCCAAGGTGA

Predicted protein sequences of Glyma02g08360

Limit To All Plant Sequences

>Glyma02g08360.1   sequence type=predicted peptide   gene model=Glyma02g08360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERELWGSVFIYWVLLARPLWLVSANMEGDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAVLSGQLVPQLGQLKNLQYLELYSNNISGPIPNDLGNLTNLVSLDLYLNRFSGPIPESLGKLSKLRFLRLNNNSLTGPIPMPLTNITALQVLDLSNNQLSGVVPDNGSFSLFTPISFNNNLDLCGPVTGHPCPGSPPFSPPPPFVPPSPISAPEGNSATGAIAGGVAAGAALLFAAPAIVFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPAHQQPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHSNYIDAEVEQLIQVALLCSQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR*

>Glyma02g08360.2   sequence type=predicted peptide   gene model=Glyma02g08360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERELWGSVFIYWVLLARPLWLVSANMEGDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAVLSGQLVPQLGQLKNLQYFNNISGPIPNDLGNLTNLVSLDLYLNRFSGPIPESLGKLSKLRFLRLNNNSLTGPIPMPLTNITALQVLDLSNNQLSGVVPDNGSFSLFTPISFNNNLDLCGPVTGHPCPGSPPFSPPPPFVPPSPISAPEGNSATGAIAGGVAAGAALLFAAPAIVFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPAHQQPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHSNYIDAEVEQLIQVALLCSQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR*

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