SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71870 | AT | Annotation by Michelle Graham. TAIR10: MATE efflux family protein | chr1:27032456-27034895 REVERSE LENGTH=510 | SoyBase | E_val: 0 | ISS |
| GO:0006855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport | SoyBase | N/A | ISS |
| GO:0009062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0015238 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015297 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: antiporter activity | SoyBase | N/A | ISS |
| KOG1347 | KOG | Uncharacterized membrane protein, predicted efflux pump | JGI | ISS | |
| PTHR11206 | Panther | MULTIDRUG RESISTANCE PUMP | JGI | ISS | |
| PTHR11206:SF38 | Panther | NA+ DRIVEN MULTIDRUG EFFLUX PUMP | JGI | ISS | |
| PF01554 | PFAM | MatE | JGI | ISS | |
| UniRef100_D7KYZ3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mate efflux family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KYZ3_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E07E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E07E related cluster n=1 Tax=unknown RepID=UPI000233E07E | SoyBase | E_val: 0 | ISS |
|
Glyma02g08277 not represented in the dataset |
Glyma02g08277 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g27370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g075300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g08277.2 sequence type=transcript gene model=Glyma02g08277 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTTCTAATTCTTGCTGCTTTCTATCATGGGATAATAGATAGATATGATAATCAAACATTGTAGACCCTCTTTTGTTTCTATCTCCTTTTCTTTCTTTCACTCTCCCCTATATGAAGCTACTACTACTATTGCTCTATAGGTGTTGTCAGAAGTAGTCTTTCTTCTTCTCTTCTAACTTCTTCACCACCCTTTTGCAGAACAACAACGCATACATATATTGGTCAAGAAGAATGGGTGATAACAAGGACCGGGATTTCTTTTCCCACAAATTCCCCACAACCTCTCAGGTGATGGAAGAGATGAAGGAACTGTGGGGCATGGCTCTACCCATAACAGCTATGAACATGTTGGTATTTGTGAGGGCAGTGGTTTCTGTACTCTTTTTGGGTAGGCTTGGAAGCCTGGAGCTCGCAGGTGGTGCACTTTCCATAGGCTTCACCAACATAACAGGGTACTCTGTTCTCGTGGGTCTTGCAGCAGGCCTAGAACCTGTGTGCAGCCAAGCCTATGGTAGCAAAAACTGGGACCTTCTCTCACTCTCTCTCCAACGCATGGTCCTCATCCTCCTCATGGCAATAGTCCCCATAAGCCTCCTATGGCTTAACCTAGAAAGGATCATGCTTTTCATGGGCCAAGACAGTGCCATCACAGGAATGGCATCACTCTACTGCTTCTACTCCCTCCCAGACCTTTTAACAAACACCTTGCTTCAACCCTTAAGGGTGTTTTTGAGGTCACAAAAAGTGACCAAGCCTATGATGTATTGCTCCCTTGTGGCTGTTCTGTTCCATGTGCCATTGAACTATCTTTTGGTGGTTGTGATGGGGCTTGGGGTGCCAGGGGTGGCCATGGCTTCGGTGATGACTAATCTGAACATGGTGGTGCTGATGGCAGGGTATGTGTGTGTGTGCAGGAAGAGGGAGGTGGTGGTGAAGTGGGGGTGTTGGGGTGTGGGTGGGGGAGTGGTGTGTTCTGGGTTGGGGCAGTTGATGGGTTTTGCTGTGCCTAGTTGCCTAATGATATGTTTGGAGTGGTGGTGGTACGAGATTGTCACTGTGCTGGCTGGGTACTTGCCACGTCCAACACTGGCTGTGGCTGCCACTGGTATTCTCATTCAGACAACTAGCATGATGTACACAGTCCCAATGGCACTTGCAGGCTGTGTTTCTGCCAGGGTAGGGAATGAGCTTGGAGCTGGAAAACCATACAAGGCAAAGCTAGCAGCAGTGGTTGCCTTAGGATGTGCTTTTGTGATAGGCTTCATCAATGTGACATGGACTGTGATTCTGGGTCAAAGATGGGCTGGGCTTTTCACCAATGATGAGCCCGTCAAAGCGTTGGTTGCATCAGTTATGCCAATTATGGGCTTGTGTGAGCTTGGAAACTGCCCACAAACCACGGGCTGTGGGATCCTTCGTGGCATGGCCCGGCCTGGTATTGGGGCTCACATAAACCTGGGCTCTTTCTACTTTGTGGGCACCCCGGTGGCAGTGGGCCTGGCATTTTGGTTCAAGGTTGGGTTCAGTGGGCTTTGGTTTGGGCTTCTGTCGGCCCAGGTTGCATGTGCTGTGTCAATCCTCTATGTTGTGTTGGTGAGGACAGATTGGGAAGCTGAGGCTTTGAAGGCTGAGAAGCTCACAAGGATTGAAATGGGTAGTTGCAATGGGCTTAGGAATAAGGAAAATGAGAGAGATGAAGAAAGAAAAGGGTTGTTGGTGAATGGAAATGGGAACAACAAAGATGACATTTGCTAAGAAAAAAGACACCACACTAGAGAAATGAAATGACACCAATTATGATTTATGACATTGGGATTTTGTTTGGTGGGTAGGATCAATGGGGTTGGAGGCTTGTGAGTGGTTGCTTTATGATAATTTTGAGGAGGGCTTATCTTATTTTTTTAAAATTTAATTTAATTTGCTTGGGAAACCATTCCAATCCAAATCTCATTTTCGATACCAATTGTTTACATATTTTAGCACTTTTCTCTCACCTTCTCTTGTGTTCCTAATGGGCAAGTTTTGTTTTGGGTATTGTGATGAAAAAGTAGCTTTTGCTGTGTTGTGAGTGACAAGTGCATGGAGATGTGACTGGATGTGAGAATCTGGCATCTGACATTTGATAATATTTTAGATGTAAGGCTGAGACGTAAGAGACAGAGATTAAACTGAAAGCAGCTTTGCCTGAAAGCTGTTGCACACAATGCAGCACTTGATAATTATTCAAGCCGTGTATAACTCGCGTCAGAACTCGACCTGTGCTAAACGCCAACAATTTGATTCTCCACAGTCCACACTGCTGACTCATGATCAATTTAGATCGTGACTTTGATCTAAATTGAAGTTTACCTGTTATTAAGAGTTGGTTCTACTTGTTTGACAAATCGTTTTTCAGTTGAATTGAATGAAGTTTATTCCAAAGTTATTTCTTGC
>Glyma02g08277.1 sequence type=CDS gene model=Glyma02g08277 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGATAACAAGGACCGGGATTTCTTTTCCCACAAATTCCCCACAACCTCTCAGGTGATGGAAGAGATGAAGGAACTGTGGGGCATGGCTCTACCCATAACAGCTATGAACATGTTGGTATTTGTGAGGGCAGTGGTTTCTGTACTCTTTTTGGGTAGGCTTGGAAGCCTGGAGCTCGCAGGTGGTGCACTTTCCATAGGCTTCACCAACATAACAGGGTACTCTGTTCTCGTGGGTCTTGCAGCAGGCCTAGAACCTGTGTGCAGCCAAGCCTATGGTAGCAAAAACTGGGACCTTCTCTCACTCTCTCTCCAACGCATGGTCCTCATCCTCCTCATGGCAATAGTCCCCATAAGCCTCCTATGGCTTAACCTAGAAAGGATCATGCTTTTCATGGGCCAAGACAGTGCCATCACAGGAATGGCATCACTCTACTGCTTCTACTCCCTCCCAGACCTTTTAACAAACACCTTGCTTCAACCCTTAAGGGTGTTTTTGAGGTCACAAAAAGTGACCAAGCCTATGATGTATTGCTCCCTTGTGGCTGTTCTGTTCCATGTGCCATTGAACTATCTTTTGGTGGTTGTGATGGGGCTTGGGGTGCCAGGGGTGGCCATGGCTTCGGTGATGACTAATCTGAACATGGTGGTGCTGATGGCAGGGTATGTGTGTGTGTGCAGGAAGAGGGAGGTGGTGGTGAAGTGGGGGTGTTGGGGTGTGGGTGGGGGAGTGGTGTGTTCTGGGTTGGGGCAGTTGATGGGTTTTGCTGTGCCTAGTTGCCTAATGATATGTTTGGAGTGGTGGTGGTACGAGATTGTCACTGTGCTGGCTGGGTACTTGCCACGTCCAACACTGGCTGTGGCTGCCACTGGTATTCTCATTCAGACAACTAGCATGATGTACACAGTCCCAATGGCACTTGCAGGCTGTGTTTCTGCCAGGGTAGGGAATGAGCTTGGAGCTGGAAAACCATACAAGGCAAAGCTAGCAGCAGTGGTTGCCTTAGGATGTGCTTTTGTGATAGGCTTCATCAATGTGACATGGACTGTGATTCTGGGTCAAAGATGGGCTGGGCTTTTCACCAATGATGAGCCCGTCAAAGCGTTGGTTGCATCAGTTATGCCAATTATGGGCTTGTGTGAGCTTGGAAACTGCCCACAAACCACGGGCTGTGGGATCCTTCGTGGCATGGCCCGGCCTGGTATTGGGGCTCACATAAACCTGGGCTCTTTCTACTTTGTGGGCACCCCGGTGGCAGTGGGCCTGGCATTTTGGTTCAAGGTTGGGTTCAGTGGGCTTTGGTTTGGGCTTCTGTCGGCCCAGGTTGCATGTGCTGTGTCAATCCTCTATGTTGTGTTGGTGAGGACAGATTGGGAAGCTGAGGCTTTGAAGGCTGAGAAGCTCACAAGGATTGAAATGGGTAGTTGCAATGGGCTTAGGAATAAGGAAAATGAGAGAGATGAAGAAAGAAAAGGGTTGTTGGTGAATGGAAATGGGAACAACAAAGATGACATTTGCTAA >Glyma02g08277.2 sequence type=CDS gene model=Glyma02g08277 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGATAACAAGGACCGGGATTTCTTTTCCCACAAATTCCCCACAACCTCTCAGGTGATGGAAGAGATGAAGGAACTGTGGGGCATGGCTCTACCCATAACAGCTATGAACATGTTGGTATTTGTGAGGGCAGTGGTTTCTGTACTCTTTTTGGGTAGGCTTGGAAGCCTGGAGCTCGCAGGTGGTGCACTTTCCATAGGCTTCACCAACATAACAGGGTACTCTGTTCTCGTGGGTCTTGCAGCAGGCCTAGAACCTGTGTGCAGCCAAGCCTATGGTAGCAAAAACTGGGACCTTCTCTCACTCTCTCTCCAACGCATGGTCCTCATCCTCCTCATGGCAATAGTCCCCATAAGCCTCCTATGGCTTAACCTAGAAAGGATCATGCTTTTCATGGGCCAAGACAGTGCCATCACAGGAATGGCATCACTCTACTGCTTCTACTCCCTCCCAGACCTTTTAACAAACACCTTGCTTCAACCCTTAAGGGTGTTTTTGAGGTCACAAAAAGTGACCAAGCCTATGATGTATTGCTCCCTTGTGGCTGTTCTGTTCCATGTGCCATTGAACTATCTTTTGGTGGTTGTGATGGGGCTTGGGGTGCCAGGGGTGGCCATGGCTTCGGTGATGACTAATCTGAACATGGTGGTGCTGATGGCAGGGTATGTGTGTGTGTGCAGGAAGAGGGAGGTGGTGGTGAAGTGGGGGTGTTGGGGTGTGGGTGGGGGAGTGGTGTGTTCTGGGTTGGGGCAGTTGATGGGTTTTGCTGTGCCTAGTTGCCTAATGATATGTTTGGAGTGGTGGTGGTACGAGATTGTCACTGTGCTGGCTGGGTACTTGCCACGTCCAACACTGGCTGTGGCTGCCACTGGTATTCTCATTCAGACAACTAGCATGATGTACACAGTCCCAATGGCACTTGCAGGCTGTGTTTCTGCCAGGGTAGGGAATGAGCTTGGAGCTGGAAAACCATACAAGGCAAAGCTAGCAGCAGTGGTTGCCTTAGGATGTGCTTTTGTGATAGGCTTCATCAATGTGACATGGACTGTGATTCTGGGTCAAAGATGGGCTGGGCTTTTCACCAATGATGAGCCCGTCAAAGCGTTGGTTGCATCAGTTATGCCAATTATGGGCTTGTGTGAGCTTGGAAACTGCCCACAAACCACGGGCTGTGGGATCCTTCGTGGCATGGCCCGGCCTGGTATTGGGGCTCACATAAACCTGGGCTCTTTCTACTTTGTGGGCACCCCGGTGGCAGTGGGCCTGGCATTTTGGTTCAAGGTTGGGTTCAGTGGGCTTTGGTTTGGGCTTCTGTCGGCCCAGGTTGCATGTGCTGTGTCAATCCTCTATGTTGTGTTGGTGAGGACAGATTGGGAAGCTGAGGCTTTGAAGGCTGAGAAGCTCACAAGGATTGAAATGGGTAGTTGCAATGGGCTTAGGAATAAGGAAAATGAGAGAGATGAAGAAAGAAAAGGGTTGTTGGTGAATGGAAATGGGAACAACAAAGATGACATTTGCTAA
>Glyma02g08277.1 sequence type=predicted peptide gene model=Glyma02g08277 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDNKDRDFFSHKFPTTSQVMEEMKELWGMALPITAMNMLVFVRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLAAGLEPVCSQAYGSKNWDLLSLSLQRMVLILLMAIVPISLLWLNLERIMLFMGQDSAITGMASLYCFYSLPDLLTNTLLQPLRVFLRSQKVTKPMMYCSLVAVLFHVPLNYLLVVVMGLGVPGVAMASVMTNLNMVVLMAGYVCVCRKREVVVKWGCWGVGGGVVCSGLGQLMGFAVPSCLMICLEWWWYEIVTVLAGYLPRPTLAVAATGILIQTTSMMYTVPMALAGCVSARVGNELGAGKPYKAKLAAVVALGCAFVIGFINVTWTVILGQRWAGLFTNDEPVKALVASVMPIMGLCELGNCPQTTGCGILRGMARPGIGAHINLGSFYFVGTPVAVGLAFWFKVGFSGLWFGLLSAQVACAVSILYVVLVRTDWEAEALKAEKLTRIEMGSCNGLRNKENERDEERKGLLVNGNGNNKDDIC* >Glyma02g08277.2 sequence type=predicted peptide gene model=Glyma02g08277 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDNKDRDFFSHKFPTTSQVMEEMKELWGMALPITAMNMLVFVRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLAAGLEPVCSQAYGSKNWDLLSLSLQRMVLILLMAIVPISLLWLNLERIMLFMGQDSAITGMASLYCFYSLPDLLTNTLLQPLRVFLRSQKVTKPMMYCSLVAVLFHVPLNYLLVVVMGLGVPGVAMASVMTNLNMVVLMAGYVCVCRKREVVVKWGCWGVGGGVVCSGLGQLMGFAVPSCLMICLEWWWYEIVTVLAGYLPRPTLAVAATGILIQTTSMMYTVPMALAGCVSARVGNELGAGKPYKAKLAAVVALGCAFVIGFINVTWTVILGQRWAGLFTNDEPVKALVASVMPIMGLCELGNCPQTTGCGILRGMARPGIGAHINLGSFYFVGTPVAVGLAFWFKVGFSGLWFGLLSAQVACAVSILYVVLVRTDWEAEALKAEKLTRIEMGSCNGLRNKENERDEERKGLLVNGNGNNKDDIC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
