Glyma02g08010 - SoyBase

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Report for Sequence Feature Glyma02g08010

Feature Type:	gene_model
Chromosome:	Gm02
Start:	6286735
stop:	6290109
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g08010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18110	AT	Annotation by Michelle Graham. TAIR10: novel cap-binding protein \| chr5:5989105-5990588 REVERSE LENGTH=221	SoyBase	E_val: 3.00E-123	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
KOG1669	KOG	Predicted mRNA cap-binding protein related to eIF-4E	JGI		ISS
PTHR11960	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED	JGI		ISS
PF01652	PFAM	Eukaryotic initiation factor 4E	JGI		ISS
UniRef100_D3TI43	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cap-binding protein-like protein n=1 Tax=Phaseolus vulgaris RepID=D3TI43_PHAVU	SoyBase	E_val: 3.00E-157	ISS
UniRef100_I1JD60	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JD60_SOYBN	SoyBase	E_val: 4.00E-173	ISS

Expression Patterns of Glyma02g08010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g08010 not represented in the dataset	Glyma02g08010 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g08010

Paralog	Evidence	Comments
Glyma16g27010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g08010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g072700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g08010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g08010

Limit To All Plant Sequences

>Glyma02g08010.2   sequence type=transcript   gene model=Glyma02g08010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAATGAAAACAAATAAAAAAAAAGGGTTAAAATATTTCTGAAGTGAATCTACCTATAAAGCACAAAAACCCAAGCGCGTTGCTTCCTCTGAACCGAAACGAACCTCAACAACGCTGAGCGCAGAAAGGGGAAAAGGGGATTAGGGTTTAGGAAGCAGCGACAACAATGGATTTCACAGTGGAGAAGAAGGAATCAGAGAACAACGCCGAAAATGCTCACCCAACAACGTTAGATTCTTCTTCTCAATTGGCATCGGCACTTGATTCCAACAACAAAGAAATCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTGTCTCTGGCCGTTTTTGGGAGGACCTGGTTCTTGCCTTGGTGGGTGACCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATTCATCTTACAGGAACACTTGGTTGAGAGGCTAGAGATCCAATTGTGTTCTTGCCAAAGTCCCTGCCGTGGAAGCTATATTGCATACTGGTGCAGCTTTCACTCAGCCAGGACTGGTTTCACTCAGCCATTGGCTTCGGTCTAGTGATGGGGCTGGGTGTTCCTGGACTGGTTTCTGTCTTTTGAATTCAATGTACGACAGCTACATTGCTACTGCTTTAAATAGTTTCATTTGGTTACTTGGGGTTCACTCTAATTTTGTGTAGTGTGTCGTAGTTTTTGTAAATAAACTTGTTCGTCTTGTTGCTTTTCACCTCGCTTATGGAGAGAATCATGGCTTTTCATTCCCATTATATATGGTAGATTACTTCTGTAGCGCATTTTACAGAGACATTAATCCTTTGAACTGAGACGATCGATGAGATGGGAGGGGATCAAGTCTACTTTAAACTGATAAATATAGTCTACTTTAAACTGATAAATATTTGTATTGAATTTTGTTATTGGCTTGATTTTAAAATAAAAACATCCGAACAATTTATCACTCATTGTATTTATTTAAAATTAATTTTGCAAAGGTA

>Glyma02g08010.3   sequence type=transcript   gene model=Glyma02g08010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAATGAAAACAAATAAAAAAAAAGGGTTAAAATATTTCTGAAGTGAATCTACCTATAAAGCACAAAAACCCAAGCGCGTTGCTTCCTCTGAACCGAAACGAACCTCAACAACGCTGAGCGCAGAAAGGGGAAAAGGGGATTAGGGTTTAGGAAGCAGCGACAACAATGGATTTCACAGTGGAGAAGAAGGAATCAGAGAACAACGCCGAAAATGCTCACCCAACAACGTTAGATTCTTCTTCTCAATTGGCATCGGCACTTGATTCCAACAACAAAGAAATCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGAAAATTGTTGAATTTAGTACGGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTGTCTCTGGCCGTTTTTGGGAGGACCTGGTTCTTGCCTTGGTGGGTGACCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATTCATCTTACAGGAACACTTGGTTGAGAGGCTAGAGATCCAATTGTGTTCTTGCCAAAGTCCCTGCCGTGGAAGCTATATTGCATACTGGTGCAGCTTTCACTCAGCCAGGACTGGTTTCACTCAGCCATTGGCTTCGGTCTAGTGATGGGGCTGGGTGTTCCTGGACTGGTTTCTGTCTTTTGAATTCAATGTACGACAGCTACATTGCTACTGCTTTAAATAGTTTCATTTGGTTACTTGGGGTTCACTCTAATTTTGTGTAGTGTGTCGTAGTTTTTGTAAATAAACTTGTTCGTCTTGTTGCTTTTCACCTCGCTTATGGAGAGAATCATGGCTTTTCATTCCCATTATATATGGTAGATTACTTCTGTAGCGCATTTTACAGAGACATTAATCCTTTGAACTGAGACGATCGATGAGATGGGAGGGGATCAAGTCTACTTTAAACTGATAAATATAGTCTACTTTAAACTGATAAATATTTGTATTGAATTTTGTTATTGGCTTGATTTTAAAATAAAAACATCCGAACAATTTATCACTCATTGTATTTATTTAAAATTAATTTTGCAAAGGTA

Coding sequences of Glyma02g08010

Limit To All Plant Sequences

>Glyma02g08010.1   sequence type=CDS   gene model=Glyma02g08010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCACAGTGGAGAAGAAGGAATCAGAGAACAACGCCGAAAATGCTCACCCAACAACGTTAGATTCTTCTTCTCAATTGGCATCGGCACTTGATTCCAACAACAAAGAAATCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGCAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTGTCTCTGGCCGTTTTTGGGAGGACCTGGTTCTTGCCTTGGTGGGTGACCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATTCATCTTACAGGAACACTTGGTTGAGAGGCTAG

>Glyma02g08010.2   sequence type=CDS   gene model=Glyma02g08010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCACAGTGGAGAAGAAGGAATCAGAGAACAACGCCGAAAATGCTCACCCAACAACGTTAGATTCTTCTTCTCAATTGGCATCGGCACTTGATTCCAACAACAAAGAAATCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTGTCTCTGGCCGTTTTTGGGAGGACCTGGTTCTTGCCTTGGTGGGTGACCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATTCATCTTACAGGAACACTTGGTTGAGAGGCTAG

>Glyma02g08010.3   sequence type=CDS   gene model=Glyma02g08010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCACAGTGGAGAAGAAGGAATCAGAGAACAACGCCGAAAATGCTCACCCAACAACGTTAGATTCTTCTTCTCAATTGGCATCGGCACTTGATTCCAACAACAAAGAAATCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGAAAATTGTTGAATTTAGTACGGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTGTCTCTGGCCGTTTTTGGGAGGACCTGGTTCTTGCCTTGGTGGGTGACCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATTCATCTTACAGGAACACTTGGTTGAGAGGCTAG

Predicted protein sequences of Glyma02g08010

Limit To All Plant Sequences

>Glyma02g08010.1   sequence type=predicted peptide   gene model=Glyma02g08010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFTVEKKESENNAENAHPTTLDSSSQLASALDSNNKEIEERQARELKAGLHPLKQHKFVFWYTRRTPGVRNQTSYEDNIKKIVEFSTVEGFWVCYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLRDNSSYRNTWLRG*

>Glyma02g08010.2   sequence type=predicted peptide   gene model=Glyma02g08010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFTVEKKESENNAENAHPTTLDSSSQLASALDSNNKEIEERQARELKAGLHPLKHKFVFWYTRRTPGVRNQTSYEDNIKKIVEFSTVEGFWVCYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLRDNSSYRNTWLRG*

>Glyma02g08010.3   sequence type=predicted peptide   gene model=Glyma02g08010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFTVEKKESENNAENAHPTTLDSSSQLASALDSNNKEIEERQARELKAGLHPLKKIVEFSTVEGFWVCYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLRDNSSYRNTWLRG*

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