SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma02g07940): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma02g07940): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma02g07940

Feature Type:gene_model
Chromosome:Gm02
Start:6251508
stop:6255753
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18170AT Annotation by Michelle Graham. TAIR10: glutamate dehydrogenase 1 | chr5:6006172-6008248 FORWARD LENGTH=411 SoyBaseE_val: 0ISS
GO:0006520GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process SoyBaseN/AISS
GO:0006807GO-bp Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process SoyBaseN/AISS
GO:0009646GO-bp Annotation by Michelle Graham. GO Biological Process: response to absence of light SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0004353GO-mf Annotation by Michelle Graham. GO Molecular Function: glutamate dehydrogenase [NAD(P)+] activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016639GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor SoyBaseN/AISS
GO:0050897GO-mf Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding SoyBaseN/AISS
KOG2250 KOG Glutamate/leucine/phenylalanine/valine dehydrogenases JGI ISS
PTHR11606Panther GLUTAMATE DEHYDROGENASE JGI ISS
PF00208PFAM Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JGI ISS
PF02812PFAM Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JGI ISS
UniRef100_I1JD54UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glutamate dehydrogenase n=1 Tax=Glycine max RepID=I1JD54_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI0002337326UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337326 related cluster n=1 Tax=unknown RepID=UPI0002337326 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g07940 not represented in the dataset

Glyma02g07940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma16g26940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g072200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g07940.2   sequence type=transcript   gene model=Glyma02g07940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGATCTTCATTCAATGTTTCTTATTTGCTTACTGTGTGAATGTGTGATAAAACTGAGTTCAGTCATATCTCTACCTATCCCTCGCTTTAGTTTATTGTTTAAAAAATCATGCATAAAACTTTTTACAAAAAAGTCAATCTTACTAAATAGCATTATGTTTCTCAAATCACCTTCCCTATTGATGATGGCACCTTGATGGCTTCTGTTTTGTTCTTATTTTGTATTTATCAGATAAGCATAAAATGCAACTCTAGTTCTAAAACATGTTGAATGAAAATGCAGGTTGAGTGTACCATCCCCAAAGATGATGGAAGCTTGGCCACTTTTGTTGGATTCAGAGTTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGGATCAGATACCATCCTGAGGTTGAACCAGATGAAGTGAATGCTTTGGCACAACTAATGACATGGAAGACAGCAGTAGCGAATATACCATATGGTGGAGCCAAAGGAGGGATAGGGTGTGATCCTGCAAAATTAAGTGTGTCAGAGTTAGAAAGACTCACTAGAGTTTTTACCCAGAAAATTCATGATCTGATTGGAGTTCAGACAGATGTACCCGCTCCTGATATGGGAACGGGACCACAGACTATGGCATGGATTCTAGATGAGTATTCCAAATTTCATGGCCACTCTCCAGCAGTAGTGACTGGGAAACCTATAGAACTCGGTGGATCTCTAGGCAGAGATGCAGCTACAGGACGAGGAGTCCTCTTTGCAACTGAGGCTTTGCTTAAGGAGCATGGGATGAGTCTATCCGGACAGCGGCTTGTCATACAGGGTTTTGGAAATGTGGGGTCTTGGGCTGCCAAATTGATCAGTGAGAAAGGTGGAAAAGTTGTTGCTGTGAGTGACATAACTGGGGCCATCAAGAATAGCAATGGTCTTGACATACCAAGCCTACTCAAGTATTCTGAACAACACCAGGGAGTCAAAGGATTCCATGGTGGTGAAGCAATTGACCCTAACTCAATATTGGTTGAAGACTGTGATGTTCTTGTCCCAGCAGCTCTTGGTGGAGTCATCAATAGGGAAAACGCAAATGAGATTAAGGCCAAATTTGTTGTTGAAGCAGCCAATCACCCAACTGACCCGGAGGCTGATGAGATTCTGAAAAAGAAAGGGGTTGTGATCCTCCCAGATATATTTGCTAATTCTGGAGGAGTCACAGTCAGCTACTTTGAGTGGGTGCAGAACATTCAAGGGTTCATGTGGGATGAGGAGAAGGTGAACAACGAGCTAAAGACATACATGACCAAAGGGTTCAAAGATGTGAAGGAAATGTGCAAAACCCATAACTGTGATCTTCGTATGGGAGCATTCACCCTTGCAGTTAACCGTGTGGCAAGGGCCACCACCCTTAGGGGTTGGGAAGCTTGAAATCATAATGAAGAGTTCCATTGTCAGCCTCAGCAAAACCTTACACAATTCTTGCATATGCATCCGAAATTTTTACGGATTTTTTTAGATCTTTTATTTTTTTAAGAAAAATAAAGAAATTCCTTTCCACTTTATGATTGTTTTATTTGTTATGCCTTAGATGTATTTTTAGAACACAAGCAATATATCCAATTTATGCCTTTGTTGGTCCAATTGCAATGAGGAATCACTTGTTTTCTGATGCTTCTTTGTTAGGATGTATTTCCCTTTTCC

>Glyma02g07940.1   sequence type=CDS   gene model=Glyma02g07940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCACTAGCAGCCACCAACAGGAACTTTAGGCTGGCCTCTAGGCTCCTTGGATTGGATTCGAAGCTTGAAAAAAGCTTGCTGATTCCATTCAGAGAAATCAAGGTTGAGTGTACCATCCCCAAAGATGATGGAAGCTTGGCCACTTTTGTTGGATTCAGAGTTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGGATCAGATACCATCCTGAGGTTGAACCAGATGAAGTGAATGCTTTGGCACAACTAATGACATGGAAGACAGCAGTAGCGAATATACCATATGGTGGAGCCAAAGGAGGGATAGGGTGTGATCCTGCAAAATTAAGTGTGTCAGAGTTAGAAAGACTCACTAGAGTTTTTACCCAGAAAATTCATGATCTGATTGGAGTTCAGACAGATGTACCCGCTCCTGATATGGGAACGGGACCACAGACTATGGCATGGATTCTAGATGAGTATTCCAAATTTCATGGCCACTCTCCAGCAGTAGTGACTGGGAAACCTATAGAACTCGGTGGATCTCTAGGCAGAGATGCAGCTACAGGACGAGGAGTCCTCTTTGCAACTGAGGCTTTGCTTAAGGAGCATGGGATGAGTCTATCCGGACAGCGGCTTGTCATACAGGGTTTTGGAAATGTGGGGTCTTGGGCTGCCAAATTGATCAGTGAGAAAGGTGGAAAAGTTGTTGCTGTGAGTGACATAACTGGGGCCATCAAGAATAGCAATGGTCTTGACATACCAAGCCTACTCAAGTATTCTGAACAACACCAGGGAGTCAAAGGATTCCATGGTGGTGAAGCAATTGACCCTAACTCAATATTGGTTGAAGACTGTGATGTTCTTGTCCCAGCAGCTCTTGGTGGAGTCATCAATAGGGAAAACGCAAATGAGATTAAGGCCAAATTTGTTGTTGAAGCAGCCAATCACCCAACTGACCCGGAGGCTGATGAGATTCTGAAAAAGAAAGGGGTTGTGATCCTCCCAGATATATTTGCTAATTCTGGAGGAGTCACAGTCAGCTACTTTGAGTGGGTGCAGAACATTCAAGGGTTCATGTGGGATGAGGAGAAGGTGAACAACGAGCTAAAGACATACATGACCAAAGGGTTCAAAGATGTGAAGGAAATGTGCAAAACCCATAACTGTGATCTTCGTATGGGAGCATTCACCCTTGCAGTTAACCGTGTGGCAAGGGCCACCACCCTTAGGGGTTGGGAAGCTTGA

>Glyma02g07940.2   sequence type=CDS   gene model=Glyma02g07940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATGCAGGTTGAGTGTACCATCCCCAAAGATGATGGAAGCTTGGCCACTTTTGTTGGATTCAGAGTTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGGATCAGATACCATCCTGAGGTTGAACCAGATGAAGTGAATGCTTTGGCACAACTAATGACATGGAAGACAGCAGTAGCGAATATACCATATGGTGGAGCCAAAGGAGGGATAGGGTGTGATCCTGCAAAATTAAGTGTGTCAGAGTTAGAAAGACTCACTAGAGTTTTTACCCAGAAAATTCATGATCTGATTGGAGTTCAGACAGATGTACCCGCTCCTGATATGGGAACGGGACCACAGACTATGGCATGGATTCTAGATGAGTATTCCAAATTTCATGGCCACTCTCCAGCAGTAGTGACTGGGAAACCTATAGAACTCGGTGGATCTCTAGGCAGAGATGCAGCTACAGGACGAGGAGTCCTCTTTGCAACTGAGGCTTTGCTTAAGGAGCATGGGATGAGTCTATCCGGACAGCGGCTTGTCATACAGGGTTTTGGAAATGTGGGGTCTTGGGCTGCCAAATTGATCAGTGAGAAAGGTGGAAAAGTTGTTGCTGTGAGTGACATAACTGGGGCCATCAAGAATAGCAATGGTCTTGACATACCAAGCCTACTCAAGTATTCTGAACAACACCAGGGAGTCAAAGGATTCCATGGTGGTGAAGCAATTGACCCTAACTCAATATTGGTTGAAGACTGTGATGTTCTTGTCCCAGCAGCTCTTGGTGGAGTCATCAATAGGGAAAACGCAAATGAGATTAAGGCCAAATTTGTTGTTGAAGCAGCCAATCACCCAACTGACCCGGAGGCTGATGAGATTCTGAAAAAGAAAGGGGTTGTGATCCTCCCAGATATATTTGCTAATTCTGGAGGAGTCACAGTCAGCTACTTTGAGTGGGTGCAGAACATTCAAGGGTTCATGTGGGATGAGGAGAAGGTGAACAACGAGCTAAAGACATACATGACCAAAGGGTTCAAAGATGTGAAGGAAATGTGCAAAACCCATAACTGTGATCTTCGTATGGGAGCATTCACCCTTGCAGTTAACCGTGTGGCAAGGGCCACCACCCTTAGGGGTTGGGAAGCTTGA

>Glyma02g07940.1   sequence type=predicted peptide   gene model=Glyma02g07940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNALAATNRNFRLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGSLATFVGFRVQHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPAKLSVSELERLTRVFTQKIHDLIGVQTDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIELGGSLGRDAATGRGVLFATEALLKEHGMSLSGQRLVIQGFGNVGSWAAKLISEKGGKVVAVSDITGAIKNSNGLDIPSLLKYSEQHQGVKGFHGGEAIDPNSILVEDCDVLVPAALGGVINRENANEIKAKFVVEAANHPTDPEADEILKKKGVVILPDIFANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHNCDLRMGAFTLAVNRVARATTLRGWEA*

>Glyma02g07940.2   sequence type=predicted peptide   gene model=Glyma02g07940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMQVECTIPKDDGSLATFVGFRVQHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPAKLSVSELERLTRVFTQKIHDLIGVQTDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIELGGSLGRDAATGRGVLFATEALLKEHGMSLSGQRLVIQGFGNVGSWAAKLISEKGGKVVAVSDITGAIKNSNGLDIPSLLKYSEQHQGVKGFHGGEAIDPNSILVEDCDVLVPAALGGVINRENANEIKAKFVVEAANHPTDPEADEILKKKGVVILPDIFANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHNCDLRMGAFTLAVNRVARATTLRGWEA*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo