SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G33260 | AT | Annotation by Michelle Graham. TAIR10: Tryptophan/tyrosine permease | chr2:14100840-14102252 REVERSE LENGTH=436 | SoyBase | E_val: 0 | ISS |
| GO:0001708 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell fate specification | SoyBase | N/A | ISS |
| GO:0006863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport | SoyBase | N/A | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005302 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-tyrosine transmembrane transporter activity | SoyBase | N/A | ISS |
| PF03222 | PFAM | Tryptophan/tyrosine permease family | JGI | ISS | |
| UniRef100_G7KQ49 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tyrosine-specific transport protein n=1 Tax=Medicago truncatula RepID=G7KQ49_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JD42 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JD42_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma02g07780 not represented in the dataset |
Glyma02g07780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g070800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g07780.3 sequence type=transcript gene model=Glyma02g07780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGGAGCAGACATGGGTTTAGTCCTTTAAGATTGCCTAGAATAGAATCATTATTCACAAGCAGAGTTGTGTGCTAGAGTCATACACTCTTGTTCCATCACTTGGCCTGCAAAATCAAAGAACTCCCTTTTACACATAAATCACTCCACCAACATGCGACTCTCCCAGCCATTATTCAGATACAAGCCTTTCACAAGCCAAAAAATTAATGGCACAGTGAATTTTGTTGGACATAGAACCCATCTTCAAACAAGTTATAAGAAAACTGTAGCTCCTATTTTCATAACCAATGGCTCCAATGCTCCTCTCACCACAAAGTTAGCACCCTGCAATGCAATCACATTGCCTACCCTCTCAGCTGAGGATGATGCAAACAATGCTAACAACCGCACCAAGAATGAGGTTTCTAATGGAACTTCCAAGGGAAAGAGCTTCTGGGGTGCTGTTAGTTTGATCATTGGCACTGCTGTGGGTCCTGGAATGCTGGCTTTGCCTGCTTTGACTGTTAAATCTGGTCCATTTCCTTCATCAATCATAATACTTGCTTCATGGCTCTATGTCATTTCCTCAATCATTATTGTTGCTGAACTTTGCTTTGAATCCATGGAACAAGATGGGGTTGAAGAAATGAGCTTCACAAGCCTTGCAACAAAGACATTAGGAAGTGGTTTTGGTGCATTGGTTGCTTTGGTTTACTCAACTTTGTCTTTTTCCTTGCTGGTGGCCTGTGTTGCTGGTATTGGATCCATTTTCTCTCCATGGTTTCAAGGGAGGAATGTTTTGCTTGTTCATGCCTTGTTTCCTCTTCTTGTTGGAATATTAATTGCCTTTTTCCCATTCAAGACCATTGATGTTGCGAACCGGCTTTTGTGCTTCCTTATGCTTTTCTCTATAACTGGACTTGTTGCCATTGGAATATCTGTGGCAAGAGCCAACATAATAAGCTCATTTGCTTTAGCCTCATGGAAAATTTCTTCAATACTTCCTATCATACCTGTGGCTGTACTCACATTAGGATTTCATGTCATAACTCCTTTTATATGCAAAGTTGCTGGGAACACTATTGATGAGGCTAGAAAAGCAATACTAATTGGTGGAACGGTTCCTTTAGTCATGGTTTTGTCATGGAATTTGATTGTGTTGGGGCTTGTGGGGACCAATAACATACCAGCTACCTTTGGTGACCCTATGTCCCTTTTGCTTTCTGTGAATCCATCTGCTTTATCAGCAGTTCAAGGCTTTGCCTTCTCTGCTATGGCAACTAGCTTGATAGGATACGCTGTAAGTTTGCCTAAACAGCTTCTTGACACTTTGGAGTTAGTATCTGAAAAAGCCAAAGCTTGTGATGAGCATAATTATAGTGGAAAAGTTGGATTAGCTTCTTACTCAGGAGGGTCTTGCATTGGTAATTCTGGGAAGGTTTGCTTCAAAGGTTCAAGAAATGTGACTATGGTTGCATCTACAATGAGATCAAATGAGCAAGCATGTGATCCGATTAAAGTGCTTGTAACATTGTCCCTCCTTGGTTTCTCAGTGCTGATAGCTTCATTTTTTCGCTCAATGTTTTCAAGAGCTCTTGATCTTGCTGGGGTATATGCCAATTGTTTTCTCTTTGGCATTATTCCTCCTGTGATGGCTTACATGCAACAATCCAAGAAGAAAATAAGGGTATTGTGAAGAAAAAGGCTTTGATCATTGGCATTTAACCGTAATGCAATGATTTTGCAGGAAATCAATCATTCCAGGCGGAAATGGAACACTTCTACTGCTTTTCATTGTCTCTGTGGTTTTGGGAATTTGGCATTAGAGATTCTCCCAATGACTCGGCTTAGAAATTGGCCAAAAAAGATAAACAGTGAAGTAGCTGAAATCACTTGTTTCTGTGAAGCCCCTTTACTCTTTCTGATATTCTAATTGCTAATATATAGTTCATGTTGAGTAAAGTGTGTAATGATATTCCATAAATTGAAAGTATTCTAGTTGCAATCCAATGAAATCATACAAGACAACGAAATCTGATAAGATCACATACAAAAAAAATGGAAGAAAATGGAACACATGGCATGTGCACATATTAGACTTCAGTGAGAT
>Glyma02g07780.2 sequence type=CDS gene model=Glyma02g07780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGACTCTCCCAGCCATTATTCAGATACAAGCCTTTCACAAGCCAAAAAATTAATGGCACAGTGAATTTTGTTGGACATAGAACCCATCTTCAAACAAGTTATAAGAAAACTGTAGCTCCTATTTTCATAACCAATGGCTCCAATGCTCCTCTCACCACAAAGTTAGCACCCTGCAATGCAATCACATTGCCTACCCTCTCAGCTGAGGATGATGCAAACAATGCTAACAACCGCACCAAGAATGAGGTTTCTAATGGAACTTCCAAGGGAAAGAGCTTCTGGGGTGCTGTTAGTTTGATCATTGGCACTGCTGTGGGTCCTGGAATGCTGGCTTTGCCTGCTTTGACTGTTAAATCTGGTCCATTTCCTTCATCAATCATAATACTTGCTTCATGGCTCTATGTCATTTCCTCAATCATTATTGTTGCTGAACTTTGCTTTGAATCCATGGAACAAGATGGGGTTGAAGAAATGAGCTTCACAAGCCTTGCAACAAAGACATTAGGAAGTGGTTTTGGTGCATTGGTTGCTTTGGTTTACTCAACTTTGTCTTTTTCCTTGCTGGTGGCCTGTGTTGCTGGTATTGGATCCATTTTCTCTCCATGGTTTCAAGGGAGGAATGTTTTGCTTGTTCATGCCTTGTTTCCTCTTCTTGTTGGAATATTAATTGCCTTTTTCCCATTCAAGACCATTGATGTTGCGAACCGGCTTTTGTGCTTCCTTATGCTTTTCTCTATAACTGGACTTGTTGCCATTGGAATATCTGTGGCAAGAGCCAACATAATAAGCTCATTTGCTTTAGCCTCATGGAAAATTTCTTCAATACTTCCTATCATACCTGTGGCTGTACTCACATTAGGATTTCATGTCATAACTCCTTTTATATGCAAAGTTGCTGGGAACACTATTGATGAGGCTAGAAAAGCAATACTAATTGGTGGAACGGTTCCTTTAGTCATGGTTTTGTCATGGAATTTGATTGTGTTGGGGCTTGTGGGGACCAATAACATACCAGCTACCTTTGGTGACCCTATGTCCCTTTTGCTTTCTGTGAATCCATCTGCTTTATCAGCAGTTCAAGGCTTTGCCTTCTCTGCTATGGCAACTAGCTTGATAGGATACGCTGTAAGTTTGCCTAAACAGCTTCTTGACACTTTGGAGTTAGTATCTGAAAAAGCCAAAGCTTGTGATGAGCATAATTATAGTGGAAAAGTTGGATTAGCTTCTTACTCAGGAGGGTCTTGCATTGGTAATTCTGGGAAGGTTTGCTTCAAAGGTTCAAGAAATGTGACTATGGTTGCATCTACAATGAGATCAAATGAGCAAGCATGTGATCCGATTAAAGTGCTTGTAACATTGTCCCTCCTTGGTTTCTCAGTGCTGATAGCTTCATTTTTTCGCTCAATGTTTTCAAGAGCTCTTGATCTTGCTGGGGTATATGCCAATTGTTTTCTCTTTGGCATTATTCCTCCTGTGATGGCTTACATGCAACAATCCAAGAAGAAAATAAGGAAATCAATCATTCCAGGCGGAAATGGAACACTTCTACTGCTTTTCATTGTCTCTGTGGTTTTGGGAATTTGGCATTAG >Glyma02g07780.3 sequence type=CDS gene model=Glyma02g07780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGACTCTCCCAGCCATTATTCAGATACAAGCCTTTCACAAGCCAAAAAATTAATGGCACAGTGAATTTTGTTGGACATAGAACCCATCTTCAAACAAGTTATAAGAAAACTGTAGCTCCTATTTTCATAACCAATGGCTCCAATGCTCCTCTCACCACAAAGTTAGCACCCTGCAATGCAATCACATTGCCTACCCTCTCAGCTGAGGATGATGCAAACAATGCTAACAACCGCACCAAGAATGAGGTTTCTAATGGAACTTCCAAGGGAAAGAGCTTCTGGGGTGCTGTTAGTTTGATCATTGGCACTGCTGTGGGTCCTGGAATGCTGGCTTTGCCTGCTTTGACTGTTAAATCTGGTCCATTTCCTTCATCAATCATAATACTTGCTTCATGGCTCTATGTCATTTCCTCAATCATTATTGTTGCTGAACTTTGCTTTGAATCCATGGAACAAGATGGGGTTGAAGAAATGAGCTTCACAAGCCTTGCAACAAAGACATTAGGAAGTGGTTTTGGTGCATTGGTTGCTTTGGTTTACTCAACTTTGTCTTTTTCCTTGCTGGTGGCCTGTGTTGCTGGTATTGGATCCATTTTCTCTCCATGGTTTCAAGGGAGGAATGTTTTGCTTGTTCATGCCTTGTTTCCTCTTCTTGTTGGAATATTAATTGCCTTTTTCCCATTCAAGACCATTGATGTTGCGAACCGGCTTTTGTGCTTCCTTATGCTTTTCTCTATAACTGGACTTGTTGCCATTGGAATATCTGTGGCAAGAGCCAACATAATAAGCTCATTTGCTTTAGCCTCATGGAAAATTTCTTCAATACTTCCTATCATACCTGTGGCTGTACTCACATTAGGATTTCATGTCATAACTCCTTTTATATGCAAAGTTGCTGGGAACACTATTGATGAGGCTAGAAAAGCAATACTAATTGGTGGAACGGTTCCTTTAGTCATGGTTTTGTCATGGAATTTGATTGTGTTGGGGCTTGTGGGGACCAATAACATACCAGCTACCTTTGGTGACCCTATGTCCCTTTTGCTTTCTGTGAATCCATCTGCTTTATCAGCAGTTCAAGGCTTTGCCTTCTCTGCTATGGCAACTAGCTTGATAGGATACGCTGTAAGTTTGCCTAAACAGCTTCTTGACACTTTGGAGTTAGTATCTGAAAAAGCCAAAGCTTGTGATGAGCATAATTATAGTGGAAAAGTTGGATTAGCTTCTTACTCAGGAGGGTCTTGCATTGGTAATTCTGGGAAGGTTTGCTTCAAAGGTTCAAGAAATGTGACTATGGTTGCATCTACAATGAGATCAAATGAGCAAGCATGTGATCCGATTAAAGTGCTTGTAACATTGTCCCTCCTTGGTTTCTCAGTGCTGATAGCTTCATTTTTTCGCTCAATGTTTTCAAGAGCTCTTGATCTTGCTGGGGTATATGCCAATTGTTTTCTCTTTGGCATTATTCCTCCTGTGATGGCTTACATGCAACAATCCAAGAAGAAAATAAGGGTATTGTGA
>Glyma02g07780.2 sequence type=predicted peptide gene model=Glyma02g07780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLSQPLFRYKPFTSQKINGTVNFVGHRTHLQTSYKKTVAPIFITNGSNAPLTTKLAPCNAITLPTLSAEDDANNANNRTKNEVSNGTSKGKSFWGAVSLIIGTAVGPGMLALPALTVKSGPFPSSIIILASWLYVISSIIIVAELCFESMEQDGVEEMSFTSLATKTLGSGFGALVALVYSTLSFSLLVACVAGIGSIFSPWFQGRNVLLVHALFPLLVGILIAFFPFKTIDVANRLLCFLMLFSITGLVAIGISVARANIISSFALASWKISSILPIIPVAVLTLGFHVITPFICKVAGNTIDEARKAILIGGTVPLVMVLSWNLIVLGLVGTNNIPATFGDPMSLLLSVNPSALSAVQGFAFSAMATSLIGYAVSLPKQLLDTLELVSEKAKACDEHNYSGKVGLASYSGGSCIGNSGKVCFKGSRNVTMVASTMRSNEQACDPIKVLVTLSLLGFSVLIASFFRSMFSRALDLAGVYANCFLFGIIPPVMAYMQQSKKKIRKSIIPGGNGTLLLLFIVSVVLGIWH* >Glyma02g07780.3 sequence type=predicted peptide gene model=Glyma02g07780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLSQPLFRYKPFTSQKINGTVNFVGHRTHLQTSYKKTVAPIFITNGSNAPLTTKLAPCNAITLPTLSAEDDANNANNRTKNEVSNGTSKGKSFWGAVSLIIGTAVGPGMLALPALTVKSGPFPSSIIILASWLYVISSIIIVAELCFESMEQDGVEEMSFTSLATKTLGSGFGALVALVYSTLSFSLLVACVAGIGSIFSPWFQGRNVLLVHALFPLLVGILIAFFPFKTIDVANRLLCFLMLFSITGLVAIGISVARANIISSFALASWKISSILPIIPVAVLTLGFHVITPFICKVAGNTIDEARKAILIGGTVPLVMVLSWNLIVLGLVGTNNIPATFGDPMSLLLSVNPSALSAVQGFAFSAMATSLIGYAVSLPKQLLDTLELVSEKAKACDEHNYSGKVGLASYSGGSCIGNSGKVCFKGSRNVTMVASTMRSNEQACDPIKVLVTLSLLGFSVLIASFFRSMFSRALDLAGVYANCFLFGIIPPVMAYMQQSKKKIRVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
