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Report for Sequence Feature Glyma02g07760

Feature Type:gene_model
Chromosome:Gm02
Start:6141117
stop:6143447
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18270AT Annotation by Michelle Graham. TAIR10: Arabidopsis NAC domain containing protein 87 | chr5:6041241-6042743 REVERSE LENGTH=335 SoyBaseE_val: 1.00E-109ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007275GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organismal development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF02365PFAM No apical meristem (NAM) protein JGI ISS
UniRef100_B2ZGR5UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein n=1 Tax=Glycine max RepID=B2ZGR5_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1JD40UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JD40_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma16g26810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g070600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g07760.1   sequence type=CDS   gene model=Glyma02g07760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAAGAGCCGGTTGTGGTTAACAAAGGAGATGATCATGATCATGATCACGAGCCTTTGGATTTGCCTCCAGGTTTCAGGTTCCACCCCACAGATGAAGAGATCATCACTTGTTACCTCACAGAGAAAGTCCTCAATAGAACCTTCAGTGCAACTGCTATTGGAGAAGCTGATTTCAACAAGTGTGAGCCTTGGGACTTGCCCAAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCAACAGGCATGAGAACCAATAGAGCAACCCAATCTGGGTATTGGAAGGCCACTGGCAAAGACAAAGAGATTTTCAAAGGGAAGAACAACCTTGTTGGGATGAAGAAGACCCTTGTTTTCTATAGAGGAAGAGCTCCTAAGGGTGAGAAGTCAAATTGGGTTATGCATGAATTCAGATTGGATGGCAAATTCGCATGTTACAACCTTCCCAAGGCTTCAAAGGATGAATGGGTTGTGTGCAAGGTTTTCCACAAGGGCAACACCACTACTACAGATGTTGTTAACAAAAGGGCACTCCCAATAATTAACCCTTGCCTTTTGAGAATGAACTCATCAATTGGAGAAGATCTATTTGATTTCTCTTCTCTCCCACCTCTCGTGGATCCTCTCTTTGACCAAACCTCAAACAAGCACATTGACAATGATTTCAAGGGTACTAATAACACGCCTTCATCTTCATCAGCTAAACCACCATCAAGTGGCTACTATCTTCCCAACTTCATCAACAACAACAACAATCAGCACATGCTAATGATGATGAAGCCAGAAGAACACAAAATGTATGAGATTCCCACCAACAACTATGCCTCCACCAGCCAAGTGAATTTCACTACTACTAATAACCCAATAATGGGAATTAGCACAGGCAATAACAATACCCTTCTTTCTCAGCCTCAAATTCGAACCCAAAATTCAACCTCAGTACCCTTCAACATGTTCCAAGATTATTATAATTATATGAACCAAGGAAAACAATGCAAGATGGAGCAATTCTCAAACACTAAGAACCAGCCTGTGGTCAGTGCCTCTCAAGACACGTGCCTCAGCAATGACACTTCCTCGGTGGTTTCTAAGCAAGACAACAACATAGGAAGGAACAAGGCATTGTACGAGGATAATTTTGAAGCTCCTTCATCAGTTGCTACTACCCTCTCAGATTTGGAATGCCTGTGGGATGATTACTGA

>Glyma02g07760.1   sequence type=predicted peptide   gene model=Glyma02g07760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEEPVVVNKGDDHDHDHEPLDLPPGFRFHPTDEEIITCYLTEKVLNRTFSATAIGEADFNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIFKGKNNLVGMKKTLVFYRGRAPKGEKSNWVMHEFRLDGKFACYNLPKASKDEWVVCKVFHKGNTTTTDVVNKRALPIINPCLLRMNSSIGEDLFDFSSLPPLVDPLFDQTSNKHIDNDFKGTNNTPSSSSAKPPSSGYYLPNFINNNNNQHMLMMMKPEEHKMYEIPTNNYASTSQVNFTTTNNPIMGISTGNNNTLLSQPQIRTQNSTSVPFNMFQDYYNYMNQGKQCKMEQFSNTKNQPVVSASQDTCLSNDTSSVVSKQDNNIGRNKALYEDNFEAPSSVATTLSDLECLWDDY*







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