Report for Sequence Feature Glyma02g07760
Feature Type: gene_model
Chromosome: Gm02
Start: 6141117
stop: 6143447
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g07760
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G18270 AT
Annotation by Michelle Graham. TAIR10: Arabidopsis NAC domain containing protein 87 | chr5:6041241-6042743 REVERSE LENGTH=335
SoyBase E_val: 1.00E-109 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0007275 GO-bp
Annotation by Michelle Graham. GO Biological Process: multicellular organismal development
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PF02365 PFAM
No apical meristem (NAM) protein
JGI ISS
UniRef100_B2ZGR5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein n=1 Tax=Glycine max RepID=B2ZGR5_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1JD40 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JD40_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g07760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g07760
Paralog Evidence Comments
Glyma16g26810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g07760 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g070600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g07760
Coding sequences of Glyma02g07760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g07760.1 sequence type=CDS gene model=Glyma02g07760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGGAAGAGCCGGTTGTGGTTAACAAAGGAGATGATCATGATCATGATCACGAGCCTTTGGATTTGCCTCCAGGTTTCAGGTTCCACCCCACAGATGAAGAGATCATCACTTGTTACCTCACAGAGAAAGTCCTCAATAGAACCTTCAGTGCAACTGCTATTGGAGAAGCTGATTTCAACAAGTGTGAGCCTTGGGACTTGCCCAAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCAACAGGCATGAGAACCAATAGAGCAACCCAATCTGGGTATTGGAAGGCCACTGGCAAAGACAAAGAGATTTTCAAAGGGAAGAACAACCTTGTTGGGATGAAGAAGACCCTTGTTTTCTATAGAGGAAGAGCTCCTAAGGGTGAGAAGTCAAATTGGGTTATGCATGAATTCAGATTGGATGGCAAATTCGCATGTTACAACCTTCCCAAGGCTTCAAAGGATGAATGGGTTGTGTGCAAGGTTTTCCACAAGGGCAACACCACTACTACAGATGTTGTTAACAAAAGGGCACTCCCAATAATTAACCCTTGCCTTTTGAGAATGAACTCATCAATTGGAGAAGATCTATTTGATTTCTCTTCTCTCCCACCTCTCGTGGATCCTCTCTTTGACCAAACCTCAAACAAGCACATTGACAATGATTTCAAGGGTACTAATAACACGCCTTCATCTTCATCAGCTAAACCACCATCAAGTGGCTACTATCTTCCCAACTTCATCAACAACAACAACAATCAGCACATGCTAATGATGATGAAGCCAGAAGAACACAAAATGTATGAGATTCCCACCAACAACTATGCCTCCACCAGCCAAGTGAATTTCACTACTACTAATAACCCAATAATGGGAATTAGCACAGGCAATAACAATACCCTTCTTTCTCAGCCTCAAATTCGAACCCAAAATTCAACCTCAGTACCCTTCAACATGTTCCAAGATTATTATAATTATATGAACCAAGGAAAACAATGCAAGATGGAGCAATTCTCAAACACTAAGAACCAGCCTGTGGTCAGTGCCTCTCAAGACACGTGCCTCAGCAATGACACTTCCTCGGTGGTTTCTAAGCAAGACAACAACATAGGAAGGAACAAGGCATTGTACGAGGATAATTTTGAAGCTCCTTCATCAGTTGCTACTACCCTCTCAGATTTGGAATGCCTGTGGGATGATTACTGA
Predicted protein sequences of Glyma02g07760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g07760.1 sequence type=predicted peptide gene model=Glyma02g07760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMEEPVVVNKGDDHDHDHEPLDLPPGFRFHPTDEEIITCYLTEKVLNRTFSATAIGEADFNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIFKGKNNLVGMKKTLVFYRGRAPKGEKSNWVMHEFRLDGKFACYNLPKASKDEWVVCKVFHKGNTTTTDVVNKRALPIINPCLLRMNSSIGEDLFDFSSLPPLVDPLFDQTSNKHIDNDFKGTNNTPSSSSAKPPSSGYYLPNFINNNNNQHMLMMMKPEEHKMYEIPTNNYASTSQVNFTTTNNPIMGISTGNNNTLLSQPQIRTQNSTSVPFNMFQDYYNYMNQGKQCKMEQFSNTKNQPVVSASQDTCLSNDTSSVVSKQDNNIGRNKALYEDNFEAPSSVATTLSDLECLWDDY*