Glyma02g07620 - SoyBase

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Report for Sequence Feature Glyma02g07620

Feature Type:	gene_model
Chromosome:	Gm02
Start:	6001382
stop:	6008141
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g07620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02070	AT	Annotation by Michelle Graham. TAIR10: Cysteine proteinases superfamily protein \| chr3:361368-363132 FORWARD LENGTH=219	SoyBase	E_val: 9.00E-129	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity	SoyBase	N/A	ISS
PTHR12419	Panther	UNCHARACTERIZED	JGI		ISS
PF02338	PFAM	OTU-like cysteine protease	JGI		ISS
UniRef100_I1JD28	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JD28_SOYBN	SoyBase	E_val: 1.00E-173	ISS
UniRef100_Q9SGA5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3G02070 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SGA5_ARATH	SoyBase	E_val: 4.00E-126	ISS

Expression Patterns of Glyma02g07620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g07620 not represented in the dataset	Glyma02g07620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g07620

Paralog	Evidence	Comments
Glyma16g26640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g07620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g069000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g07620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g07620

Limit To All Plant Sequences

>Glyma02g07620.4   sequence type=transcript   gene model=Glyma02g07620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGGAATTGAAACCAACCTTTATTTAAGTCTCACACCTTACTTGCTACCTTCTTTCTTTTTCACCGTCGCACCCATTATTCATTGCATCATCGTTCACTCGCATCAGAATCACAGGTTCAGTTTCTGTGGATTGTTGTAAAAAATTTCCTTTAGGTTGAAACTTGGAGTGCCGGCTCAGGATATTATGATGAATGGAAATGGTACTCAGACTGAGTATTGGGGCGAAAGTTCGGGTTCAACTTCCCATAGCAGTCAGCAGGATGTGGAGGATGACAGGATGATTGCTCTTGTGCTGTCAGAAGAGTATGCCAAATTAGATGGAGCAGTTGGTCGGCGCCTTACCAACTTGGAACCTGTTCCTCATGTACCCCGGATAAATTCCTTTTTCCCCACTGTAAGTGATGCCAGTATGGATCACCAGCGCCTGCTTCAGAGGTTGAATGTGTATGGTTTATGTGAGGTCAAGGTATCTGGAGATGGAAATTGTCAGTTCCGTGCACTTTCCGATCAGTTGTATAGGTCACCTGAACACCACAAGCATGTTCGCAAAGAGATAGTGAAACAGCTCAAAGATCACCGTTCCTTGTATGAATGCTATGTACCAATGAAGTACAAAAAATACCACAAGAAAATGGCTAAAACTGGAGAATGGGGGGACCACGTTACCTTACAGGCAGCTGCGGATAAGTTTTCTGCAAAGATATGCCTTCTAACATCATTCAGAGACACTTGCTTCATCGAAATTATGCCACTGTACCAAGCACCACAGCGTGAACTGTGGTTGAGCTTTTGGTGTGAGGTTCATTACAATTCATTATATGAAATCCGAGATGCACCAATCCAGCATAAACCAAAGAGGAAACACTGGCTGTTTTAAGAAAGGCAGATATAAGCATCATGGTCCTAAGATGTCGTGCTGTGTATACATTTTGTATCATTTATAGGTAAAGGGGAAAGTGTCCATAAAACGGTCTTTCAACTCTTGAGGCTTTGGCAAGTAGAACTCTTAACTTCCAATTGAGAATTGACCCCTTTTCAGATTTGGAAGATATCTTAATAGCTCACTACTTTCTACTTTTTGTTTGTCAGTTTATCTTTGCCACTACCTTCACGCCATTTCAACCACCCTCATTCACCCGTTGGATCTTTTGGTGATCAGCTCCTTGCATGATGCAAGATATCTAAACATTCCTCATCCTTTATGAACACAAAGTAGCTATTAATTATTCAGTGAGGGCAAACTACAAAATTGAACGTTGAAAATTCTATTTGCCAAAGTATTAATGATACAGTAGGTTGTGGACATCTTTTTCCTACACATAAAAGAGGAGGTACCTGGAGGGAAAGAAATCACTCGTATGTTTTTCTTTTTCCTGTATATTCTTTACAGTATACTTGTGATGATTTTTTTTTTTTAATTTTAATTATGCCCTTTTAGTGGGGGAGAGCAGTCCATTATTTTAATCATTGCTTTGTAAAGCAGCAAATCATGTATTGGTTTACTAAATTTGTAAAACTGTTTGAACCTTGCAAATCATTTGCTTTTCCCTTAGTC

>Glyma02g07620.5   sequence type=transcript   gene model=Glyma02g07620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGGAATTGAAACCAACCTTTATTTAAGTCTCACACCTTACTTGCTACCTTCTTTCTTTTTCACCGTCGCACCCATTATTCATTGCATCATCGTTCACTCGCATCAGAATCACAGGTTCAGTTTCTGTGGATTGTTGTAAAAAATTTCCTTTAGGTTGAAACTTGGAGTGCCGGCTCAGGATATTATGATGAATGGAAATGGTACTCAGACTGAGTATTGGGGCGAAAGTTCGGGTTCAACTTCCCATAGCAGTCAGCAGGATGTGGAGGATGACAGGATGATTGCTCTTGTGCTGTCAGAAGAGTATGCCAAATTAGATGGAGCAGTTGGTCGGCGCCTTACCAACTTGGAACCTGTTCCTCATGTACCCCGGATAAATTCCTTTTTCCCCACTGTAAGTGATGCCAGTATGGATCACCAGCGCCTGCTTCAGAGGTTGAATGTGTATGGTTTATGTGAGGTCAAGGTATCTGGAGATGGAAATTGTCAGTTCCGTGCACTTTCCGATCAGTTGTATAGGTCACCTGAACACCACAAGCATGTTCGCAAAGAGATAGTGAAACAGCTCAAAGATCACCGTTCCTTGTATGAATGCTATGTACCAATGAAGTACAAAAAATACCACAAGAAAATGGCTAAAACTGGAGAATGGGGGGACCACGTTACCTTACAGGCAGCTGCGGATAAGTTTTCTGCAAAGATATGCCTTCTAACATCATTCAGAGACACTTGCTTCATCGAAATTATGCCACTGTACCAAGCACCACAGCGTGAACTGTGGTTGAGCTTTTGGTGTGAGGTTCATTACAATTCATTATATGAAATCCGAGATGCACCAATCCAGCATAAACCAAAGAGGAAACACTGGCTGTTTTAAGAAAGGCAGATATAAGCATCATGGTCCTAAGATGTCGTGCTGTGTATACATTTTGTATCATTTATAGGTAAAGGGGAAAGTGTCCATAAAACGGTCTTTCAACTCTTGAGGCTTTGTTTATCTTTGCCACTACCTTCACGCCATTTCAACCACCCTCATTCACCCGTTGGATCTTTTGGTGATCAGCTCCTTGCATGATGCAAGATATCTAAACATTCCTCATCCTTTATGAACACAAAGTAGCTATTAATTATTCAGTGAGGGCAAACTACAAAATTGAACGTTGAAAATTCTATTTGCCAAAGTATTAATGATACAGTAGGTTGTGGACATCTTTTTCCTACACATAAAAGAGGAGGTACCTGGAGGGAAAGAAATCACTCGTATGTTTTTCTTTTTCCTGTATATTCTTTACAGTATACTTGTGATGATTTTTTTTTTTTAATTTTAATTATGCCCTTTTAGTGGGGGAGAGCAGTCCATTATTTTAATCATTGCTTTGTAAAGCAGCAAATCATGTATTGGTTTACTAAATTTGTAAAACTGTTTGAACCTTGCAAATCATTTGCTTTTCCCTTAG

Coding sequences of Glyma02g07620

Limit To All Plant Sequences

>Glyma02g07620.1   sequence type=CDS   gene model=Glyma02g07620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAATGGAAATGGTACTCAGACTGAGTATTGGGGCGAAAGTTCGGGTTCAACTTCCCATAGCAGTCAGCAGGATGTGGAGGATGACAGGATGATTGCTCTTGTGCTGTCAGAAGAGTATGCCAAATTAGATGGAGCAGTTGGTCGGCGCCTTACCAACTTGGAACCTGTTCCTCATGTACCCCGGATAAATTCCTTTTTCCCCACTGTAAGTGATGCCAGTATGGATCACCAGCGCCTGCTTCAGAGGTTGAATGTGTATGGTTTATGTGAGGTCAAGGTATCTGGAGATGGAAATTGTCAGTTCCGTGCACTTTCCGATCAGTTGTATAGGTCACCTGAACACCACAAGCATGTTCGCAAAGAGATAGTGAAACAGCTCAAAGATCACCGTTCCTTGTATGAATGCTATGTACCAATGAAGTACAAAAAATACCACAAGAAAATGGCTAAAACTGGAGAATGGGGGGACCACGTTACCTTACAGGCAGCTGCGGATAAGTTTTCTGCAAAGATATGCCTTCTAACATCATTCAGAGACACTTGCTTCATCGAAATTATGCCACTGTACCAAGCACCACAGCGTGAACTGTGGTTGAGCTTTTGGTGTGAGGTTCATTACAATTCATTATATGAAATCCGAGATGCACCAATCCAGCATAAACCAAAGAGGAAACACTGGCTGTTTTAA

>Glyma02g07620.4   sequence type=CDS   gene model=Glyma02g07620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAATGGAAATGGTACTCAGACTGAGTATTGGGGCGAAAGTTCGGGTTCAACTTCCCATAGCAGTCAGCAGGATGTGGAGGATGACAGGATGATTGCTCTTGTGCTGTCAGAAGAGTATGCCAAATTAGATGGAGCAGTTGGTCGGCGCCTTACCAACTTGGAACCTGTTCCTCATGTACCCCGGATAAATTCCTTTTTCCCCACTGTAAGTGATGCCAGTATGGATCACCAGCGCCTGCTTCAGAGGTTGAATGTGTATGGTTTATGTGAGGTCAAGGTATCTGGAGATGGAAATTGTCAGTTCCGTGCACTTTCCGATCAGTTGTATAGGTCACCTGAACACCACAAGCATGTTCGCAAAGAGATAGTGAAACAGCTCAAAGATCACCGTTCCTTGTATGAATGCTATGTACCAATGAAGTACAAAAAATACCACAAGAAAATGGCTAAAACTGGAGAATGGGGGGACCACGTTACCTTACAGGCAGCTGCGGATAAGTTTTCTGCAAAGATATGCCTTCTAACATCATTCAGAGACACTTGCTTCATCGAAATTATGCCACTGTACCAAGCACCACAGCGTGAACTGTGGTTGAGCTTTTGGTGTGAGGTTCATTACAATTCATTATATGAAATCCGAGATGCACCAATCCAGCATAAACCAAAGAGGAAACACTGGCTGTTTTAA

>Glyma02g07620.5   sequence type=CDS   gene model=Glyma02g07620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAATGGAAATGGTACTCAGACTGAGTATTGGGGCGAAAGTTCGGGTTCAACTTCCCATAGCAGTCAGCAGGATGTGGAGGATGACAGGATGATTGCTCTTGTGCTGTCAGAAGAGTATGCCAAATTAGATGGAGCAGTTGGTCGGCGCCTTACCAACTTGGAACCTGTTCCTCATGTACCCCGGATAAATTCCTTTTTCCCCACTGTAAGTGATGCCAGTATGGATCACCAGCGCCTGCTTCAGAGGTTGAATGTGTATGGTTTATGTGAGGTCAAGGTATCTGGAGATGGAAATTGTCAGTTCCGTGCACTTTCCGATCAGTTGTATAGGTCACCTGAACACCACAAGCATGTTCGCAAAGAGATAGTGAAACAGCTCAAAGATCACCGTTCCTTGTATGAATGCTATGTACCAATGAAGTACAAAAAATACCACAAGAAAATGGCTAAAACTGGAGAATGGGGGGACCACGTTACCTTACAGGCAGCTGCGGATAAGTTTTCTGCAAAGATATGCCTTCTAACATCATTCAGAGACACTTGCTTCATCGAAATTATGCCACTGTACCAAGCACCACAGCGTGAACTGTGGTTGAGCTTTTGGTGTGAGGTTCATTACAATTCATTATATGAAATCCGAGATGCACCAATCCAGCATAAACCAAAGAGGAAACACTGGCTGTTTTAA

Predicted protein sequences of Glyma02g07620

Limit To All Plant Sequences

>Glyma02g07620.1   sequence type=predicted peptide   gene model=Glyma02g07620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMNGNGTQTEYWGESSGSTSHSSQQDVEDDRMIALVLSEEYAKLDGAVGRRLTNLEPVPHVPRINSFFPTVSDASMDHQRLLQRLNVYGLCEVKVSGDGNCQFRALSDQLYRSPEHHKHVRKEIVKQLKDHRSLYECYVPMKYKKYHKKMAKTGEWGDHVTLQAAADKFSAKICLLTSFRDTCFIEIMPLYQAPQRELWLSFWCEVHYNSLYEIRDAPIQHKPKRKHWLF*

>Glyma02g07620.4   sequence type=predicted peptide   gene model=Glyma02g07620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMNGNGTQTEYWGESSGSTSHSSQQDVEDDRMIALVLSEEYAKLDGAVGRRLTNLEPVPHVPRINSFFPTVSDASMDHQRLLQRLNVYGLCEVKVSGDGNCQFRALSDQLYRSPEHHKHVRKEIVKQLKDHRSLYECYVPMKYKKYHKKMAKTGEWGDHVTLQAAADKFSAKICLLTSFRDTCFIEIMPLYQAPQRELWLSFWCEVHYNSLYEIRDAPIQHKPKRKHWLF*

>Glyma02g07620.5   sequence type=predicted peptide   gene model=Glyma02g07620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMNGNGTQTEYWGESSGSTSHSSQQDVEDDRMIALVLSEEYAKLDGAVGRRLTNLEPVPHVPRINSFFPTVSDASMDHQRLLQRLNVYGLCEVKVSGDGNCQFRALSDQLYRSPEHHKHVRKEIVKQLKDHRSLYECYVPMKYKKYHKKMAKTGEWGDHVTLQAAADKFSAKICLLTSFRDTCFIEIMPLYQAPQRELWLSFWCEVHYNSLYEIRDAPIQHKPKRKHWLF*

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