SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G12880 | AT | Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 12 | chr1:4390036-4391046 FORWARD LENGTH=203 | SoyBase | E_val: 5.00E-75 | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG2839 | KOG | Diadenosine and diphosphoinositol polyphosphate phosphohydrolase | JGI | ISS | |
| PTHR12629 | Panther | DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE | JGI | ISS | |
| PF00293 | PFAM | NUDIX domain | JGI | ISS | |
| UniRef100_B9RGV1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Diphosphoinositol polyphosphate phosphohydrolase, putative n=1 Tax=Ricinus communis RepID=B9RGV1_RICCO | SoyBase | E_val: 3.00E-80 | ISS |
| UniRef100_I1JD09 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JD09_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g07450 not represented in the dataset |
Glyma02g07450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g26440 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g067500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g07450.2 sequence type=transcript gene model=Glyma02g07450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCCTCTCTGAAAAGCTGTCTTCGTCTTTCTTTCTGTTTTTTTTTCCTTCGTTTTTTTCTTCTAAACATACAATAGAAGATTCCAAATCTTTGATGAAATGAAACCATTAGCATGATCGAGTTTCCATGCAAAACATACACTCAGAACCTTCGTTCAGGAAAGTTTCTCGCTGTGGCATTAAAACCAAGGAAAAACGTTACCTCGGAATCATGTCGTGTGTGGCAGCACGTACTGGGCGACAACGACAGCGTTATGAAGACAACATGCGACTCGTTTCTGGATGCATTCCCTATAGATGGAAAAAGGGAAAAGCAGATCAAATGGGAGATACAGAGGAGATAATAGAAGTACTTATGATTTCTTCACCAAAACGTGATGACCTTTTGTTTCCAAAGGGTGGATGGGAGGATGATGAGACTGTCACAGAAGCTGCTTGCCGTGAAGCTCTAGAGGAAGCTGGAGTCAAAGGGATTATAAGGGAAATTCCCTTGGGAAGATGGGAGTTCAGAAGCAAAAGCAGTAATGATTCATGTAGCCAGGAAGGATGGTGTAGAGGGTACATGTTTGCCTTGGAGGTGACTGAAGAACTTGAGACTTGGCCAGAGCAGAAAGACCATAATCGCCAATGGGTAAACATAAAAGAGGCATTCAGACTAAGCCGATATGACTGGATGTGCAAGGCATTGGAGGTGTTTTTAAGAGTTATGGCAGAGGACAGAACACTAAAGAATGAGGAAAATAATGTTGAGTCTGCTTCAATTTCAGTGCCAGATGGGTCAGAAAATCAAAATATGTCATCCAAATACTATAAAAGAACCTCTACTACAAAACACCATGGTATGCCATCAAGAACCAATATCCTGGCCCATGCTTCCCAGGAGATAGCTATGTATTTTGGTTATTGACACTACTCTTGCAGTGTGCTTCTTTATGTGGCACAGTAACTTCTTCCATTTTGGAAAAAAAAATGTAATGACACTGTCACCGTTAGTTTGCTTGAACACTTGCAAACTTAATTTAAGGTAATTTTAATTTTGTAAAAGTGAGTTTTGGCTAAAAATTGATCTTGAAGTAAACTGATTTATGTTAAAAGTAGGCTTGTAATAAATTTTGGCATAAACTTTTTAATCCAGCACAAAAGTT >Glyma02g07450.3 sequence type=transcript gene model=Glyma02g07450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTTTTGGCTCTTTTGCCTAGGAAAGTTTCTCGCTGTGGCATTAAAACCAAGGAAAAACGTTACCTCGGAATCATGTCGTGTGTGGCAGCACGTACTGGGCGACAACGACAGCGTTATGAAGACAACATGCGACTCGTTTCTGGATGCATTCCCTATAGATGGAAAAAGGGAAAAGCAGATCAAATGGGAGATACAGAGGAGATAATAGAAGTACTTATGATTTCTTCACCAAAACGTGATGACCTTTTGTTTCCAAAGGGTGGATGGGAGGATGATGAGACTGTCACAGAAGCTGCTTGCCGTGAAGCTCTAGAGGAAGCTGGAGTCAAAGGGATTATAAGGGAAATTCCCTTGGGAAGATGGGAGTTCAGAAGCAAAAGCAGTAATGATTCATGTAGCCAGGAAGGATGGTGTAGAGGGTACATGTTTGCCTTGGAGGTGACTGAAGAACTTGAGACTTGGCCAGAGCAGAAAGACCATAATCGCCAATGGGTAAACATAAAAGAGGCATTCAGACTAAGCCGATATGACTGGATGTGCAAGGCATTGGAGGTGTTTTTAAGAGTTATGGCAGAGGACAGAACACTAAAGAATGAGGAAAATAATGTTGAGTCTGCTTCAATTTCAGTGCCAGATGGGTCAGAAAATCAAAATATGTCATCCAAATACTATAAAAGAACCTCTACTACAAAACACCATGGTATGCCATCAAGAACCAATATCCTGGCCCATGCTTCCCAGGAGATAGCTATGTATTTTGGTTATTGACACTACTCTTGCAGTGTGCTTCTTTATGTGGCACAGTAACTTCTTCCATTTTGGAAAAAAAAATGTAATGACACTGTCACCGTTAGTTTGCTTGAACACTTGCAAACTTAATTTAAGGTAATTTTAATTTTGTAAAAGTGAGTTTTGGCTAAAAATTGATCTTGAAGTAAACTGATTTATGTTAAAAGTAGGCTTGTAATAAATTTTGGCATAAACTTTTTAATCCAGCACAAAAGTT
>Glyma02g07450.1 sequence type=CDS gene model=Glyma02g07450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCGAGTTTCCATGCAAAACATACACTCAGAACCTTCGTTCAGTTTCTCGCTGTGGCATTAAAACCAAGGAAAAACGTTACCTCGGAATCATGTCGTGTGTGGCAGCACGTACTGGGCGACAACGACAGCGTTATGAAGACAACATGCGACTCGTTTCTGGATGCATTCCCTATAGATGGAAAAAGGGAAAAGCAGATCAAATGGGAGATACAGAGGAGATAATAGAAGTACTTATGATTTCTTCACCAAAACGTGATGACCTTTTGTTTCCAAAGGGTGGATGGGAGGATGATGAGACTGTCACAGAAGCTGCTTGCCGTGAAGCTCTAGAGGAAGCTGGAGTCAAAGGGATTATAAGGGAAATTCCCTTGGGAAGATGGGAGTTCAGAAGCAAAAGCAGTAATGATTCATGTAGCCAGGAAGGATGGTGTAGAGGGTACATGTTTGCCTTGGAGGTGACTGAAGAACTTGAGACTTGGCCAGAGCAGAAAGACCATAATCGCCAATGGGTAAACATAAAAGAGGCATTCAGACTAAGCCGATATGACTGGATGTGCAAGGCATTGGAGGTGTTTTTAAGAGTTATGGCAGAGGACAGAACACTAAAGAATGAGGAAAATAATGTTGAGTCTGCTTCAATTTCAGTGCCAGATGGGTCAGAAAATCAAAATATGTCATCCAAATACTATAAAAGAACCTCTACTACAAAACACCATGGTATGCCATCAAGAACCAATATCCTGGCCCATGCTTCCCAGGAGATAGCTATGTATTTTGGTTATTGA >Glyma02g07450.2 sequence type=CDS gene model=Glyma02g07450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAAACATACACTCAGAACCTTCGTTCAGGAAAGTTTCTCGCTGTGGCATTAAAACCAAGGAAAAACGTTACCTCGGAATCATGTCGTGTGTGGCAGCACGTACTGGGCGACAACGACAGCGTTATGAAGACAACATGCGACTCGTTTCTGGATGCATTCCCTATAGATGGAAAAAGGGAAAAGCAGATCAAATGGGAGATACAGAGGAGATAATAGAAGTACTTATGATTTCTTCACCAAAACGTGATGACCTTTTGTTTCCAAAGGGTGGATGGGAGGATGATGAGACTGTCACAGAAGCTGCTTGCCGTGAAGCTCTAGAGGAAGCTGGAGTCAAAGGGATTATAAGGGAAATTCCCTTGGGAAGATGGGAGTTCAGAAGCAAAAGCAGTAATGATTCATGTAGCCAGGAAGGATGGTGTAGAGGGTACATGTTTGCCTTGGAGGTGACTGAAGAACTTGAGACTTGGCCAGAGCAGAAAGACCATAATCGCCAATGGGTAAACATAAAAGAGGCATTCAGACTAAGCCGATATGACTGGATGTGCAAGGCATTGGAGGTGTTTTTAAGAGTTATGGCAGAGGACAGAACACTAAAGAATGAGGAAAATAATGTTGAGTCTGCTTCAATTTCAGTGCCAGATGGGTCAGAAAATCAAAATATGTCATCCAAATACTATAAAAGAACCTCTACTACAAAACACCATGGTATGCCATCAAGAACCAATATCCTGGCCCATGCTTCCCAGGAGATAGCTATGTATTTTGGTTATTGA >Glyma02g07450.3 sequence type=CDS gene model=Glyma02g07450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTGTGTGGCAGCACGTACTGGGCGACAACGACAGCGTTATGAAGACAACATGCGACTCGTTTCTGGATGCATTCCCTATAGATGGAAAAAGGGAAAAGCAGATCAAATGGGAGATACAGAGGAGATAATAGAAGTACTTATGATTTCTTCACCAAAACGTGATGACCTTTTGTTTCCAAAGGGTGGATGGGAGGATGATGAGACTGTCACAGAAGCTGCTTGCCGTGAAGCTCTAGAGGAAGCTGGAGTCAAAGGGATTATAAGGGAAATTCCCTTGGGAAGATGGGAGTTCAGAAGCAAAAGCAGTAATGATTCATGTAGCCAGGAAGGATGGTGTAGAGGGTACATGTTTGCCTTGGAGGTGACTGAAGAACTTGAGACTTGGCCAGAGCAGAAAGACCATAATCGCCAATGGGTAAACATAAAAGAGGCATTCAGACTAAGCCGATATGACTGGATGTGCAAGGCATTGGAGGTGTTTTTAAGAGTTATGGCAGAGGACAGAACACTAAAGAATGAGGAAAATAATGTTGAGTCTGCTTCAATTTCAGTGCCAGATGGGTCAGAAAATCAAAATATGTCATCCAAATACTATAAAAGAACCTCTACTACAAAACACCATGGTATGCCATCAAGAACCAATATCCTGGCCCATGCTTCCCAGGAGATAGCTATGTATTTTGGTTATTGA
>Glyma02g07450.1 sequence type=predicted peptide gene model=Glyma02g07450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIEFPCKTYTQNLRSVSRCGIKTKEKRYLGIMSCVAARTGRQRQRYEDNMRLVSGCIPYRWKKGKADQMGDTEEIIEVLMISSPKRDDLLFPKGGWEDDETVTEAACREALEEAGVKGIIREIPLGRWEFRSKSSNDSCSQEGWCRGYMFALEVTEELETWPEQKDHNRQWVNIKEAFRLSRYDWMCKALEVFLRVMAEDRTLKNEENNVESASISVPDGSENQNMSSKYYKRTSTTKHHGMPSRTNILAHASQEIAMYFGY* >Glyma02g07450.2 sequence type=predicted peptide gene model=Glyma02g07450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQNIHSEPSFRKVSRCGIKTKEKRYLGIMSCVAARTGRQRQRYEDNMRLVSGCIPYRWKKGKADQMGDTEEIIEVLMISSPKRDDLLFPKGGWEDDETVTEAACREALEEAGVKGIIREIPLGRWEFRSKSSNDSCSQEGWCRGYMFALEVTEELETWPEQKDHNRQWVNIKEAFRLSRYDWMCKALEVFLRVMAEDRTLKNEENNVESASISVPDGSENQNMSSKYYKRTSTTKHHGMPSRTNILAHASQEIAMYFGY* >Glyma02g07450.3 sequence type=predicted peptide gene model=Glyma02g07450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSCVAARTGRQRQRYEDNMRLVSGCIPYRWKKGKADQMGDTEEIIEVLMISSPKRDDLLFPKGGWEDDETVTEAACREALEEAGVKGIIREIPLGRWEFRSKSSNDSCSQEGWCRGYMFALEVTEELETWPEQKDHNRQWVNIKEAFRLSRYDWMCKALEVFLRVMAEDRTLKNEENNVESASISVPDGSENQNMSSKYYKRTSTTKHHGMPSRTNILAHASQEIAMYFGY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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