SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G55610 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22525981-22527858 FORWARD LENGTH=329 | SoyBase | E_val: 4.00E-97 | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0006857 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oligopeptide transport | SoyBase | N/A | ISS |
| GO:0009060 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aerobic respiration | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| UniRef100_C6TJA0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJA0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2QQC8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q2QQC8_ORYSJ | SoyBase | E_val: 8.00E-73 | ISS |
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Glyma02g07390 not represented in the dataset |
Glyma02g07390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g26380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g067000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g07390.1 sequence type=CDS gene model=Glyma02g07390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGGCATAGCTATACTGTTAGATCTATGGAGGAAAAATCAAAACTTGAGCTCTGGATTGCACTCTTCTCACGCCTTTCAGTCTTCCAGTGCCTTCTGTTCTGCCTCTGCTGCCACTGCCGCTGCAGCGTCTTTAGCTGCGGGAACCGGTTTTGCCTCAAGGGCATTGTTTGGGTCATCAGTTGCATATTGTGATGCTGGTGCAGTATTACCAGAAGACTACATTTCTAATATACAAAGTTCTTTTGAAAGGAATTATAAATATGATGCTGTAAGATATAGTACCAAGCAGTATAATGTGGAACTTAAGCCTCTCTTCTCTGCTTTTGAATTAAGGGCATTTGCGTTGACTTCCTTAAGGTCATTCTTGATGTTCTATTTGCCACTTTTGGAGCCCCGTGTGGAAATGGAAGATGATGAGAATTTCCAGGAGGAGGATCAAGAGCACCATGTTGATCTGGTTGTTCCCTTTAAAAAATCAGTCAAGCAAATCATGCGTGAGACAACCGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGTTGTGCATTATGTTTCACAAAGAATGGCATGGAAGCTTCTTAAAGATATCCCTAGATCAGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGGTTTACGTCTACTGTGTGAGCAGAACAACATTCAGAGGACATATGCTTGGAGTTGCAGCATCATGGCTTGTCCAAGTAGGCATTGATTTATATCGATTCTTTTCCTCCACATTCCAGGGCCAGTACGAGGATAATGATGTTGATCAAACAAATCAAGTTGGAGTTCTTGGACAGAAGGTTGTCATTGCTACTGTTAGATGTACTTCATCTTTAATCTTTGCCTCCATAGGAGCAGGAATTGGTGCAACCTTTATTCGTCGTCCATGGCTCGGCCAGTGGGTTGGGTGTGCTATTGGTGATTTGGGCGGTCCCATCATTGTAGCATTTTGTGCTGACAGATTTTGA
>Glyma02g07390.1 sequence type=predicted peptide gene model=Glyma02g07390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGIAILLDLWRKNQNLSSGLHSSHAFQSSSAFCSASAATAAAASLAAGTGFASRALFGSSVAYCDAGAVLPEDYISNIQSSFERNYKYDAVRYSTKQYNVELKPLFSAFELRAFALTSLRSFLMFYLPLLEPRVEMEDDENFQEEDQEHHVDLVVPFKKSVKQIMRETTVVTTRRILERIVVHYVSQRMAWKLLKDIPRSATRKAGRSMPTLVYVYCVSRTTFRGHMLGVAASWLVQVGIDLYRFFSSTFQGQYEDNDVDQTNQVGVLGQKVVIATVRCTSSLIFASIGAGIGATFIRRPWLGQWVGCAIGDLGGPIIVAFCADRF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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