SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13430 | AT | Annotation by Michelle Graham. TAIR10: Ubiquinol-cytochrome C reductase iron-sulfur subunit | chr5:4305414-4307399 REVERSE LENGTH=272 | SoyBase | E_val: 2.00E-140 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005750 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex III | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008121 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquinol-cytochrome-c reductase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016679 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on diphenols and related substances as donors | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| GO:0051537 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding | SoyBase | N/A | ISS |
| KOG1671 | KOG | Ubiquinol cytochrome c reductase, subunit RIP1 | JGI | ISS | |
| PTHR10134 | Panther | UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT-RELATED | JGI | ISS | |
| PF00355 | PFAM | Rieske [2Fe-2S] domain | JGI | ISS | |
| PF02921 | PFAM | Ubiquinol cytochrome reductase transmembrane region | JGI | ISS | |
| UniRef100_I1JCZ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Glycine max RepID=I1JCZ8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JCZ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Glycine max RepID=I1JCZ8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g07340 not represented in the dataset |
Glyma02g07340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g26330 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g066500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g07340.1 sequence type=CDS gene model=Glyma02g07340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGAGGGTTGCAGCTAGAAGGCTCTCTTCTTCTCTCTCATCTTCTTCTCCGTTGCGGCCCAATCACGCCGCTTCCGCTTTTCTCTCTCGAAACGACGTCGTCGTCGATGACCGCAGATCTGCTCCTTCCTCCCATCCCCTTCTTCCCTTCAGAGGTTATGCTACTGAATCCCTGATCCACACAAAAGAAAACAGCATTACTCCTGAGATTCCGCCAACTGTTACTGCTGTTAAGAACCCTACTTCTAAGATTGTCTATGATGATCACAACCATGAAAGATTTCCCCCAGGTGACCCAAGCAAGAGGGCATTTGCCTACTTCGTACTTACAGGTGGTAGGTTTGCTTATGCCTCTGTGGTCCGTCTCCTTGTCCTCAAGTTTGTGCTAAGCATGTCTGCCAGTAAGGATGTTCTTGCTCTGGCTTCACTTGAGGTTGACCTCTCCAGCATTGAGCCTGGCACTACAGTGACTGTTAAGTGGCGTGGAAAGCCTGTGTTCATCAGGCGCCGAACTGAGGACGATATCAAGCTTGCAAATAGTGTTGATGTTGGATCTCTTCGCGATCCCCAGCCGGATGCAGATAGAGTCAAGGACCCAGAATGGCTCATTGTTATTGGGGTTTGTACACATTTGGGTTGCATTCCATTGCCAAATGCTGGTGACTTTGGGGGATGGTTTTGTCCATGCCATGGATCACATTATGATATTTCTGGCAGAATTAGGAAGGGACCAGCACCATACAATCTGGAGGTTCCTACGTACACCTTCTTGGAAGAAAACAAGTTGATGATTGGTTGA
>Glyma02g07340.1 sequence type=predicted peptide gene model=Glyma02g07340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRVAARRLSSSLSSSSPLRPNHAASAFLSRNDVVVDDRRSAPSSHPLLPFRGYATESLIHTKENSITPEIPPTVTAVKNPTSKIVYDDHNHERFPPGDPSKRAFAYFVLTGGRFAYASVVRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVGSLRDPQPDADRVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLEENKLMIG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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