Glyma02g07270 - SoyBase

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Report for Sequence Feature Glyma02g07270

Feature Type:	gene_model
Chromosome:	Gm02
Start:	5772064
stop:	5783545
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g07270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10520	AT	Annotation by Michelle Graham. TAIR10: DNA polymerase lambda (POLL) \| chr1:3465964-3469248 FORWARD LENGTH=529	SoyBase	E_val: 0	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006289	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair	SoyBase	N/A	ISS
GO:0006302	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0033044	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization	SoyBase	N/A	ISS
GO:0042138	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
KOG2534	KOG	DNA polymerase IV (family X)	JGI		ISS
PTHR11276	Panther	DNA POLYMERASE TYPE-X FAMILY MEMBER	JGI		ISS
PTHR11276:SF9	Panther	DNA POLYMERASE LAMBDA	JGI		ISS
PF01909	PFAM	Nucleotidyltransferase domain	JGI		ISS
PF10391	PFAM	Fingers domain of DNA polymerase lambda	JGI		ISS
UniRef100_G7KDW6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase beta n=1 Tax=Medicago truncatula RepID=G7KDW6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337271	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337271 related cluster n=1 Tax=unknown RepID=UPI0002337271	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g07270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g07270 not represented in the dataset	Glyma02g07270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g07270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g065600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g07270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g07270

Limit To All Plant Sequences

>Glyma02g07270.2   sequence type=transcript   gene model=Glyma02g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATCTTTCAATTTTCTCTTCACAGTTGACAGTCTCAAACAACAAAGAGCTGTTTATTTATATTTACATACGCGTCCAACATCCCCGTAAGTTTTAAACTGATGGATTGCACGCACTCAAGCTGCATAGCGACTAACAGTCACTGTAGAAGCCATTAATTAACGAAGAAAGTAAAACGCCGTGAAATGGCGCCAAAGAAGAAACCCGAGTCTGATCCTCATGGAATGTTCAGTGGCATGGTCGTGTTTTTGGTCCCCAAAGGAGTTCAATCCCGTCGATTCCAGATTTGGAAGGAAAGGTTGGTGCAAATGGGGGCTGTGATAGAGGAGCGCTTCTCCAAACGGGTCACTCATGTTTTTGCTATGCACTCAGATGCCCTTCTTCAGCAACTGGATAGGGAGCGTTTGTCACGTTTTAAAGGGAGAGTTCTCCTTTATCAATGGTTGGAGGACTGCTTGAAATCAGGGGAGATACTATCAGAGGATATGTATTTACTGAAGTTGGATTCTCAAGGTGAACATATACCTGAGAAGTCTTTGGACCCTGGACTGACTAATCAAAGGACTTCAAGCGATCTTCAACAATTGCTTAATAAAAAGAGCAAATTATCTACTGAGGATACAAAAATTGTAAAAAATGAAAGCCATGATGATGATGGAAAAGAAAAAGCGGTATTTTCATCAACAAGCACAATAAGCAGTCATGGTGAAGTTGACAGTTTAAGTTATGGAAACACAAGACAACAACACCTTGATGCTGAAAATGAGGCCTCATCCTTATCATACCATCCACCTGATCTAAACAAGAACATAACAGAGATATTTGGGAAACTTGTGAACATATATAGAGCATTGGGTGATGATCGGAGGTCCTTTAGCTATCACAAAGCTATTGCCGTGATTGAAAAGTTGCCATTCAAAATTGAAAGTACCGACCAGATAAACAATCTGCCATCTATTGGCAAATCAATGAAAGATCATGTTCAGGAGATAATGACTACTGGGAAGTTATCCAAATTGGAACACTTTGAAACTGATGAGAAGGTGCGGACAATATCGTTATTTGGAGAAGTATGGGGCATAGGCCCATCCACAGCACTGAAATTGTATGAGAAGGGACATCGTTCGTTAGATGATCTTAGGAATGATGACTCACTTACAAATGCACAGAAGTTAGGGTTAAAATACTTTGATGATATCGGGCAACGGATTCCACGCCACGAGGCTCAGGAGATGGAACACATTTTACAGAAAGTTGGGGAGGATGTTTTGCCTGGGGTTGTTATCATTTGTGGGGGATCATATCGACGTGGGAAAGCTACTTGCGGAGACATTGATATCATTATAACACATCCTGATGGAAAAAGCCACAAAGGATTTTTGCCAAAGTTCGTAAAGCATTTAAAGGATATGAATTTCCTGAGGGAGGACTTAATTTTCAGTAGTCACAGTGAAGAGGCTACTGATTCTGGTGTTGACACTTATTTTGGTTTTTGCACCTATCCTGGACGGGAGTTGCGGCATCGTATTGATTTAAAGGTGTACCCAAGAGACATATATGCTTTTGGACTTGTAGCTTGGACTGGAAACGATGTCTTGAATAGAAGGTTGAGGCTGCAAGCAGAATCTAAAGGATTCCGGCTTGACGATACAGGGCTATTTCCAGCTACTCAGGGTTCTGGCGGCAAACGGGTATGGCTTAAAAGAATGTTAACGGTTTCGTCCTGATTTGGTTGAATTCTCACTTATACTTTTGCCACTGCAGGGTGCAAAAGGTAGTGCAAGTTTGAAATTTAATACTGAAAAGGAGATATTTGATTTCCTAGACTTCCCTTGTCTTGAACCACATGAAAGAAATCTCTAAGTATAGAGATGGTTAGTAAGAAATCTCTTGCTAGCTCTCAGCATTCAACCTTGTAGAATATGTTGATGTATTTAGCAAATGGCTTTTTGGTTAGTAAGAAATCTCTTGCTGCTTTGTAAATAAATATACTCGCAGGATACAATTCACGTATCTGACTTAGTATATATTTTTGTACAAAAAATGGTTCTATAAGATGAGAACAGTTTTGACGTAGGATTTGTTTAAAATGCATTATAA

Coding sequences of Glyma02g07270

Limit To All Plant Sequences

>Glyma02g07270.1   sequence type=CDS   gene model=Glyma02g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCAAAGAAGAAACCCGAGTCTGATCCTCATGGAATGTTCAGTGGCATGGTCGTGTTTTTGGTCCCCAAAGGAGTTCAATCCCGTCGATTCCAGATTTGGAAGGAAAGGTTGGTGCAAATGGGGGCTGTGATAGAGGAGCGCTTCTCCAAACGGGTCACTCATGTTTTTGCTATGCACTCAGATGCCCTTCTTCAGCAACTGGATAGGGAGCGTTTGTCACGTTTTAAAGGGAGAGTTCTCCTTTATCAATGGTTGGAGGACTGCTTGAAATCAGGGGAGATACTATCAGAGGATATGTATTTACTGAAGTTGGATTCTCAAGGTGAACATATACCTGAGAAGTCTTTGGACCCTGGACTGACTAATCAAAGGACTTCAAGCGATCTTCAACAATTGCTTAATAAAAAGAGCAAATTATCTACTGAGGATACAAAAATTGTAAAAAATGAAAGCCATGATGATGATGGAAAAGAAAAAGCGGTATTTTCATCAACAAGCACAATAAGCAGTCATGGTGAAGTTGACAGTTTAAGTTATGGAAACACAAGACAACAACACCTTGATGCTGAAAATGAGGCCTCATCCTTATCATACCATCCACCTGATCTAAACAAGAACATAACAGAGATATTTGGGAAACTTGTGAACATATATAGAGCATTGGGTGATGATCGGAGGTCCTTTAGCTATCACAAAGCTATTGCCGTGATTGAAAAGTTGCCATTCAAAATTGAAAGTACCGACCAGATAAACAATCTGCCATCTATTGGCAAATCAATGAAAGATCATGTTCAGGAGATAATGACTACTGGGAAGTTATCCAAATTGGAACACTTTGAAACTGATGAGAAGGTGCGGACAATATCGTTATTTGGAGAAGTATGGGGCATAGGCCCATCCACAGCACTGAAATTGTATGAGAAGGGACATCGTTCGTTAGATGATCTTAGGAATGATGACTCACTTACAAATGCACAGAAGTTAGGGTTAAAATACTTTGATGATATCGGGCAACGGATTCCACGCCACGAGGCTCAGGAGATGGAACACATTTTACAGAAAGTTGGGGAGGATGTTTTGCCTGGGGTTGTTATCATTTGTGGGGGATCATATCGACGTGGGAAAGCTACTTGCGGAGACATTGATATCATTATAACACATCCTGATGGAAAAAGCCACAAAGGATTTTTGCCAAAGTTCGTAAAGCATTTAAAGGATATGAATTTCCTGAGGGAGGACTTAATTTTCAGTAGTCACAGTGAAGAGGCTACTGATTCTGGTGTTGACACTTATTTTGGTTTTTGCACCTATCCTGGACGGGAGTTGCGGCATCGTATTGATTTAAAGGTGTACCCAAGAGACATATATGCTTTTGGACTTGTAGCTTGGACTGGAAACGATGTCTTGAATAGAAGGTTGAGGCTGCAAGCAGAATCTAAAGGATTCCGGCTTGACGATACAGGGCTATTTCCAGCTACTCAGGGTTCTGGCGGCAAACGGGGTGCAAAAGGTAGTGCAAGTTTGAAATTTAATACTGAAAAGGAGATATTTGATTTCCTAGACTTCCCTTGTCTTGAACCACATGAAAGAAATCTCTAA

>Glyma02g07270.2   sequence type=CDS   gene model=Glyma02g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCAAAGAAGAAACCCGAGTCTGATCCTCATGGAATGTTCAGTGGCATGGTCGTGTTTTTGGTCCCCAAAGGAGTTCAATCCCGTCGATTCCAGATTTGGAAGGAAAGGTTGGTGCAAATGGGGGCTGTGATAGAGGAGCGCTTCTCCAAACGGGTCACTCATGTTTTTGCTATGCACTCAGATGCCCTTCTTCAGCAACTGGATAGGGAGCGTTTGTCACGTTTTAAAGGGAGAGTTCTCCTTTATCAATGGTTGGAGGACTGCTTGAAATCAGGGGAGATACTATCAGAGGATATGTATTTACTGAAGTTGGATTCTCAAGGTGAACATATACCTGAGAAGTCTTTGGACCCTGGACTGACTAATCAAAGGACTTCAAGCGATCTTCAACAATTGCTTAATAAAAAGAGCAAATTATCTACTGAGGATACAAAAATTGTAAAAAATGAAAGCCATGATGATGATGGAAAAGAAAAAGCGGTATTTTCATCAACAAGCACAATAAGCAGTCATGGTGAAGTTGACAGTTTAAGTTATGGAAACACAAGACAACAACACCTTGATGCTGAAAATGAGGCCTCATCCTTATCATACCATCCACCTGATCTAAACAAGAACATAACAGAGATATTTGGGAAACTTGTGAACATATATAGAGCATTGGGTGATGATCGGAGGTCCTTTAGCTATCACAAAGCTATTGCCGTGATTGAAAAGTTGCCATTCAAAATTGAAAGTACCGACCAGATAAACAATCTGCCATCTATTGGCAAATCAATGAAAGATCATGTTCAGGAGATAATGACTACTGGGAAGTTATCCAAATTGGAACACTTTGAAACTGATGAGAAGGTGCGGACAATATCGTTATTTGGAGAAGTATGGGGCATAGGCCCATCCACAGCACTGAAATTGTATGAGAAGGGACATCGTTCGTTAGATGATCTTAGGAATGATGACTCACTTACAAATGCACAGAAGTTAGGGTTAAAATACTTTGATGATATCGGGCAACGGATTCCACGCCACGAGGCTCAGGAGATGGAACACATTTTACAGAAAGTTGGGGAGGATGTTTTGCCTGGGGTTGTTATCATTTGTGGGGGATCATATCGACGTGGGAAAGCTACTTGCGGAGACATTGATATCATTATAACACATCCTGATGGAAAAAGCCACAAAGGATTTTTGCCAAAGTTCGTAAAGCATTTAAAGGATATGAATTTCCTGAGGGAGGACTTAATTTTCAGTAGTCACAGTGAAGAGGCTACTGATTCTGGTGTTGACACTTATTTTGGTTTTTGCACCTATCCTGGACGGGAGTTGCGGCATCGTATTGATTTAAAGGTGTACCCAAGAGACATATATGCTTTTGGACTTGTAGCTTGGACTGGAAACGATGTCTTGAATAGAAGGTTGAGGCTGCAAGCAGAATCTAAAGGATTCCGGCTTGACGATACAGGGCTATTTCCAGCTACTCAGGGTTCTGGCGGCAAACGGGTATGGCTTAAAAGAATGTTAACGGTTTCGTCCTGA

Predicted protein sequences of Glyma02g07270

Limit To All Plant Sequences

>Glyma02g07270.1   sequence type=predicted peptide   gene model=Glyma02g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKKKPESDPHGMFSGMVVFLVPKGVQSRRFQIWKERLVQMGAVIEERFSKRVTHVFAMHSDALLQQLDRERLSRFKGRVLLYQWLEDCLKSGEILSEDMYLLKLDSQGEHIPEKSLDPGLTNQRTSSDLQQLLNKKSKLSTEDTKIVKNESHDDDGKEKAVFSSTSTISSHGEVDSLSYGNTRQQHLDAENEASSLSYHPPDLNKNITEIFGKLVNIYRALGDDRRSFSYHKAIAVIEKLPFKIESTDQINNLPSIGKSMKDHVQEIMTTGKLSKLEHFETDEKVRTISLFGEVWGIGPSTALKLYEKGHRSLDDLRNDDSLTNAQKLGLKYFDDIGQRIPRHEAQEMEHILQKVGEDVLPGVVIICGGSYRRGKATCGDIDIIITHPDGKSHKGFLPKFVKHLKDMNFLREDLIFSSHSEEATDSGVDTYFGFCTYPGRELRHRIDLKVYPRDIYAFGLVAWTGNDVLNRRLRLQAESKGFRLDDTGLFPATQGSGGKRGAKGSASLKFNTEKEIFDFLDFPCLEPHERNL*

>Glyma02g07270.2   sequence type=predicted peptide   gene model=Glyma02g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKKKPESDPHGMFSGMVVFLVPKGVQSRRFQIWKERLVQMGAVIEERFSKRVTHVFAMHSDALLQQLDRERLSRFKGRVLLYQWLEDCLKSGEILSEDMYLLKLDSQGEHIPEKSLDPGLTNQRTSSDLQQLLNKKSKLSTEDTKIVKNESHDDDGKEKAVFSSTSTISSHGEVDSLSYGNTRQQHLDAENEASSLSYHPPDLNKNITEIFGKLVNIYRALGDDRRSFSYHKAIAVIEKLPFKIESTDQINNLPSIGKSMKDHVQEIMTTGKLSKLEHFETDEKVRTISLFGEVWGIGPSTALKLYEKGHRSLDDLRNDDSLTNAQKLGLKYFDDIGQRIPRHEAQEMEHILQKVGEDVLPGVVIICGGSYRRGKATCGDIDIIITHPDGKSHKGFLPKFVKHLKDMNFLREDLIFSSHSEEATDSGVDTYFGFCTYPGRELRHRIDLKVYPRDIYAFGLVAWTGNDVLNRRLRLQAESKGFRLDDTGLFPATQGSGGKRVWLKRMLTVSS*

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