Glyma02g07180 - SoyBase

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Report for Sequence Feature Glyma02g07180

Feature Type:	gene_model
Chromosome:	Gm02
Start:	5722569
stop:	5725271
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g07180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54890	AT	Annotation by Michelle Graham. TAIR10: photosystem I light harvesting complex gene 1 \| chr3:20339706-20340922 REVERSE LENGTH=241	SoyBase	E_val: 2.00E-138	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009765	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting	SoyBase	N/A	ISS
GO:0009768	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting in photosystem I	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030076	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: light-harvesting complex	SoyBase	N/A	ISS
GO:0016168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding	SoyBase	N/A	ISS
PTHR21649	Panther	CHLOROPHYLL A/B BINDING PROTEIN	JGI		ISS
PF00504	PFAM	Chlorophyll A-B binding protein	JGI		ISS
UniRef100_B9T4T2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chlorophyll A/B binding protein, putative n=1 Tax=Ricinus communis RepID=B9T4T2_RICCO	SoyBase	E_val: 3.00E-147	ISS
UniRef100_I1JCY0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCY0_SOYBN	SoyBase	E_val: 3.00E-179	ISS

Expression Patterns of Glyma02g07180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g07180 not represented in the dataset	Glyma02g07180 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g07180

Paralog	Evidence	Comments
Glyma16g26130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g07180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g064700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g07180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g07180

Limit To All Plant Sequences

>Glyma02g07180.2   sequence type=transcript   gene model=Glyma02g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGGATTTGCCTATATCCACACCACTCTCCTATATTCTTGTGTTGAGATTCTAAAACATTGCCAGTGCCATTCCCTTCACACCATTCTCACAAAACAACTTTCAAACTCTGAGAAAGAATGGCTGCCAACACATTGATGAGTACTGCTATCTCAGCCTTCCCATCTCTCCTTTCTTCCTCAAAATCCAGATTTGCCACCGCAGTTCCTCTTTCTAGCTTTGGTGTCACCAATGCCTCTTCTTCTCGCTTTTCTATGAGTGCTGACTGGATGCCAGGCCAGCCTAGACCTCCTTACCTTGATGGTTCAGCACCTGGTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCTCAGGAATGGGCAGCAGTTCCTGGGGGCCAAGCAACCTACCTAGGCAATCCAGTTCCATGGGGCACCCTACCCACCATTCTGGCCATTGAATTCCTTGCTATTTCCTTTGTGGAGCACCAAAGGAGCATGGAGAAGGACCCAGAGAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCTAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGGTAAGAATAAGATATCTATTTCTTTTATTTGTAGAAATCGATCACAGGTACCGGGGGATTTACAGCAATTCACGCTGCTAAATCAATTAAACTAAAAAACCGATGTACTACTAACATTTTACATTTGTTTGTTGTATAGAAAATTGACAACATTTTATTTGTTCGATGTTTAGGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCCATGGCACAACAACATTGGAAACATCATTATTCCACAATCGATTTTGCCTTGAAAAAAAAAAATCAAATATTTGTTTCAATAGCTACCTGTATAATTCCATGTAACATTTTGTAACGAATCGGGTTGCTACGTTGGTATCTCTGTGTTGTAATTAAACTTCGAATTCAAACTCATACTCTGGCAACTCGTTGGTATGACAGAAAAGCTTGAAACAAACTTCCAAGTCCAAGTTTAAAACTTGCATTACATGATTACATCCATATCTAATGATGAATAAAACATGTTTTGGACCAACTGCAGCCTGCAAAGTGCCAATTTCCTTGAATGCTTCCTAAAGTATTAGGCATCCGGTGTATTCCAGCAAATATTATGTCAGCTAACGACTTTTCAACAACATTTGGTTTTGTTAAAACTGATTTTCCTGCAAAATAATAAGTCAGCTAAACTTATATACATGTCTCAAATTCAGCATTCAGAACTAAGGGAGTCTAACTTGAGTAGGGTGCATGAGTTTTTAAACCCCTTGGTACCTGTGTTTGATTCCTACAAGTCAAAAAAAAAAGGAAAAAAAAAATCAGCACTAAGAAATGCATATTCATTCCAGTCAATGAAAGGGAGTCATTAGTCAAGAGGTGAAAATTAGAGTATCAGGCTTTGGACTGCCAAGTGCAGTAGCTGCATTGTTGCTTCAAAAACAGTTCGACACTAAAGTCAGGAGAAGTCTAACATGTATTTTCCTTTTACTCAAAATTAGGTTTAGCTGTGCACTGTACTCTTTTATATAGTGTGCAATATTATTAATGGAAGTTATCGGTTTCAGATTAA

>Glyma02g07180.3   sequence type=transcript   gene model=Glyma02g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGGATTTGCCTATATCCACACCACTCTCCTATATTCTTGTGTTGAGATTCTAAAACATTGCCAGTGCCATTCCCTTCACACCATTCTCACAAAACAACTTTCAAACTCTGAGAAAGAATGGCTGCCAACACATTGATGAGTACTGCTATCTCAGCCTTCCCATCTCTCCTTTCTTCCTCAAAATCCAGATTTGCCACCGCAGTTCCTCTTTCTAGCTTTGGTGTCACCAATGCCTCTTCTTCTCGCTTTTCTATGAGTGCTGACTGGATGCCAGGCCAGCCTAGACCTCCTTACCTTGATGGTTCAGCACCTGGGTATGCTTCAATTTCCCTTTTTTTATTTGTTTAGTACAATAATGTTTCAACATGTTTTCAGTTCTTGAAATTATGATTTGTTTATTTTTCTAGAAAAAGAACTTAGCATGTAGTGTACATTGAAAGGAACTTATGTTTTCATACCCTCATTTTTTTAGGCAATCATATTATTGGTGTGAAATATTACAGTTTGATGAATTAATCTCTGTTGGAAAACTTGTCTTGAACATATTTAGTGGGAAAATGACTAATCTAAACTATACAAACTAAAAGTACATTGTTTTTTATTAAATGTAAAAATGAAAGTAAAAAATATAAATAAATAGAGATTGGAACTGAAAAGAAATCACTTTGTTGTGGCATATTTAAGTGATTTTGAATGGTTTGCTGGGTTTTGTTGTGATGTTGATTTGTGCATGCACGTTTTGTTCTTATGCTTCAGTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCTCAGGAATGGGCAGCAGTTCCTGGGGGCCAAGCAACCTACCTAGGCAATCCAGTTCCATGGGGCACCCTACCCACCATTCTGGCCATTGAATTCCTTGCTATTTCCTTTGTGGAGCACCAAAGGAGCATGGAGAAGGACCCAGAGAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCTAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCCATGGCACAACAACATTGGAAACATCATTATTCCACAATCGATTTTGCCTTGAAAAAAAAAAATCAAATATTTGTTTCAATAGCTACCTGTATAATTCCATGTAACATTTTGTAACGAATCGGGTTGCTACGTTGGTATCTCTGTGTTGTAATTAAACTTCGAATTCAAACTCATACTCTGGCAACTCGTTGGTATGACAGAAAAGCTTGAAACAAACTTCCAAGTCCAAGTTTAAAACTTGCATTACATGATTACATCCATATCTAATGATGAATAAAACATGTTTTGGACCAACTGCAGCCTGCAAAGTGCCAATTTCCTTGAATGCTTCCTAAAGTATTAGGCATCCGGTGTATTCCAGCAAATATTATGTCAGCTAACGACTTTTCAACAACATTTGGTTTTGTTAAAACTGATTTTCCTGCAAAATAATAAGTCAGCTAAACTTATATACATGTCTCAAATTCAGCATTCAGAACTAAGGGAGTCTAACTTGAGTAGGGTGCATGAGTTTTTAAACCCCTTGGTACCTGTGTTTGATTCCTACAAGTCAAAAAAAAAAGGAAAAAAAAAATCAGCACTAAGAAATGCATATTCATTCCAGTCAATGAAAGGGAGTCATTAGTCAAGAGGTGAAAATTAGAGTATCAGGCTTTGGACTGCCAAGTGCAGTAGCTGCATTGTTGCTTCAAAAACAGTTCGACACTAAAGTCAGGAGAAGTCTAACATGTATTTTCCTTTTACTCAAAATTAGGTTTAGCTGTGCACTGTACTCTTTTATATAGTGTGCAATATTATTAATGGAAGTTATCGGTTTCAGATTAA

Coding sequences of Glyma02g07180

Limit To All Plant Sequences

>Glyma02g07180.1   sequence type=CDS   gene model=Glyma02g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCAACACATTGATGAGTACTGCTATCTCAGCCTTCCCATCTCTCCTTTCTTCCTCAAAATCCAGATTTGCCACCGCAGTTCCTCTTTCTAGCTTTGGTGTCACCAATGCCTCTTCTTCTCGCTTTTCTATGAGTGCTGACTGGATGCCAGGCCAGCCTAGACCTCCTTACCTTGATGGTTCAGCACCTGGTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCTCAGGAATGGGCAGCAGTTCCTGGGGGCCAAGCAACCTACCTAGGCAATCCAGTTCCATGGGGCACCCTACCCACCATTCTGGCCATTGAATTCCTTGCTATTTCCTTTGTGGAGCACCAAAGGAGCATGGAGAAGGACCCAGAGAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCTAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCCATGGCACAACAACATTGGAAACATCATTATTCCACAATCGATTTTGCCTTGA

>Glyma02g07180.2   sequence type=CDS   gene model=Glyma02g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCAACACATTGATGAGTACTGCTATCTCAGCCTTCCCATCTCTCCTTTCTTCCTCAAAATCCAGATTTGCCACCGCAGTTCCTCTTTCTAGCTTTGGTGTCACCAATGCCTCTTCTTCTCGCTTTTCTATGAGTGCTGACTGGATGCCAGGCCAGCCTAGACCTCCTTACCTTGATGGTTCAGCACCTGGTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCTCAGGAATGGGCAGCAGTTCCTGGGGGCCAAGCAACCTACCTAGGCAATCCAGTTCCATGGGGCACCCTACCCACCATTCTGGCCATTGAATTCCTTGCTATTTCCTTTGTGGAGCACCAAAGGAGCATGGAGAAGGACCCAGAGAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCTAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGGTAAGAATAAGATATCTATTTCTTTTATTTGTAGAAATCGATCACAGGTACCGGGGGATTTACAGCAATTCACGCTGCTAAATCAATTAAACTAA

>Glyma02g07180.3   sequence type=CDS   gene model=Glyma02g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACGTTTTGTTCTTATGCTTCAGTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTTCCAGAGGCATTGGGCTTAGGCAACTGGGTAAAGGCTCAGGAATGGGCAGCAGTTCCTGGGGGCCAAGCAACCTACCTAGGCAATCCAGTTCCATGGGGCACCCTACCCACCATTCTGGCCATTGAATTCCTTGCTATTTCCTTTGTGGAGCACCAAAGGAGCATGGAGAAGGACCCAGAGAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCTAAGGACCCTAAAACATTCCATGAATACAAAGTCAAAGAACTTAAGAATGGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCCATGGCACAACAACATTGGAAACATCATTATTCCACAATCGATTTTGCCTTGA

Predicted protein sequences of Glyma02g07180

Limit To All Plant Sequences

>Glyma02g07180.1   sequence type=predicted peptide   gene model=Glyma02g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAANTLMSTAISAFPSLLSSSKSRFATAVPLSSFGVTNASSSRFSMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKTFHEYKVKELKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNIGNIIIPQSILP*

>Glyma02g07180.2   sequence type=predicted peptide   gene model=Glyma02g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAANTLMSTAISAFPSLLSSSKSRFATAVPLSSFGVTNASSSRFSMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKTFHEYKVKELKNGKNKISISFICRNRSQVPGDLQQFTLLNQLN*

>Glyma02g07180.3   sequence type=predicted peptide   gene model=Glyma02g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHVLFLCFSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKTFHEYKVKELKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNIGNIIIPQSILP*

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