Glyma02g07160 - SoyBase

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Report for Sequence Feature Glyma02g07160

Feature Type:	gene_model
Chromosome:	Gm02
Start:	5712005
stop:	5718152
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g07160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07950	AT	Annotation by Michelle Graham. TAIR10: rhomboid protein-related \| chr3:2531982-2534277 FORWARD LENGTH=304	SoyBase	E_val: 2.00E-150	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2890	KOG	Predicted membrane protein	JGI		ISS
PTHR13377	Panther	PLACENTAL PROTEIN 6	JGI		ISS
PF08551	PFAM	Eukaryotic integral membrane protein (DUF1751)	JGI		ISS
UniRef100_G7I9J5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7I9J5_MEDTR	SoyBase	E_val: 1.00E-164	ISS
UniRef100_I1JCX7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCX7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g07160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g07160

Paralog	Evidence	Comments
Glyma16g26110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g07160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g064500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g07160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g07160

Limit To All Plant Sequences

>Glyma02g07160.1   sequence type=CDS   gene model=Glyma02g07160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCACGCCAGCGCTTTCAGGGGGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTGGTGCTTGTTTGCGGTCACATTGCGGTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAGGACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATCTATATATGGGGTAGTGGTCAGCACATTAAGTCTCCTGTTTATTGGGAAGCTGCTTGAACCAATATGGGGCTCCAGGGAATTCTTTAAATTTATCTTTGTGGTTAATCTTCTAACTTCAGTATGTTTATTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCTTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGCATTAAGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAGTGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACACTAGAGGCTACAGCATATCTTCCAACCATTATATCTGGCACGTATATAAGCTGGATTTATCTTAGATACTGGCAGAGGAAACCAGAAACTAAACATAGAGGTGATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAGACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAGATATGATGCTTCTAATGATGGTCAAGGCAACAGTCTGGAAAGTGAGCCTTTACCAGGTTCGGACTCAATTGAGGCATCCAGGAGACGAGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGCTGTTGCACGACGTGAGTTGCAAAGAGAGGCTGAGGAAAATGTATAA

Predicted protein sequences of Glyma02g07160

Limit To All Plant Sequences

>Glyma02g07160.1   sequence type=predicted peptide   gene model=Glyma02g07160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTPALSGGTGLFSGFTRLCKGLAVVLVCGHIAVQFIPSAVNYLALIPARTIPFAWNLITAGYVEQSIYGVVVSTLSLLFIGKLLEPIWGSREFFKFIFVVNLLTSVCLFITAIALYYITRLETYLYMPLSGFHGVVSGFLVGIKQIIPDQELPFIKIKTKWLPSITVLLSIAISFWTLEATAYLPTIISGTYISWIYLRYWQRKPETKHRGDLSEDFAFSTFFPEFLRPVIDPIASIFHRMLCGRYDASNDGQGNSLESEPLPGSDSIEASRRRERGARALEERLAAERLAVARRELQREAEENV*

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