Glyma02g07110 - SoyBase

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Report for Sequence Feature Glyma02g07110

Feature Type:	gene_model
Chromosome:	Gm02
Start:	5662245
stop:	5675396
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g07110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39200	AT	Annotation by Michelle Graham. TAIR10: Seven transmembrane MLO family protein \| chr2:16356255-16359797 REVERSE LENGTH=576	SoyBase	E_val: 0	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009817	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF03094	PFAM	Mlo family	JGI		ISS
UniRef100_I1JCX2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MLO-like protein n=1 Tax=Glycine max RepID=I1JCX2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233726B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233726B related cluster n=1 Tax=unknown RepID=UPI000233726B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g07110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g07110 not represented in the dataset	Glyma02g07110 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g07110

Paralog	Evidence	Comments
Glyma16g26100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g07110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g063900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g07110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g07110

Limit To All Plant Sequences

>Glyma02g07110.2   sequence type=transcript   gene model=Glyma02g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTTGCATTTGCAGGGAAAAGTTGCTTTTGTTTCAGCATATGGGATTCACCAGCTCCATATATTCATCTTTATGCTAGCTGTTTTTCATATCCTACAATGCATTGTAACACTAGCTTTGGGAAGAACTAATATTGCATATCCTGAGAGGTTCAGGCTTGCAAAGGACACAACATTTGGACAAAGGCACTTGAATACGTGGAGTCAGTCATCAATTTCCTTATGGATAGCTAGCTTCTTCAGACAATTCTCTGGATCTGTTCAGAAAGCACATCTGGCTCCGGGAAGTGATGCAAGATTTGATTTCCAGAAGTATATCAAAAGATCACTTGATGAAGATTTTAAAGTTGTAGTGGGCATAATTGCTAAGCCATATTCAAGTTTTCAATCTGATTTGAATATGACATGGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATTATAATCTTATTAGTGGGTGCTAAGTTACAAATGATCATAACAAAGATGGGACTGAAGATTACAGACAGAGGAGAAGTTGTCAAAGGTGCACCTGTGGTTGTGCCAGGTGATGATCTGTTCTGGTTCAACCGTCCTGGTCTCCTTCTATTTTTGATTCATCTTGTGCTATTTCAGAATGCTTTTCAACTGGCGTTTTTCTCTTGGAGTACTTATGAATTCTCCATAAACTCCTGCTTCCACGAAACAACAGAAGACATTGTCATAAGACTTGTAATGGGGGTTGTGATACAATTTCTGTGCAGCTATGTGACCTTGCCTCTATATGCTCTAGTCACACAGATGGGTTCAACCATGAAGCCCACCATCTTCAATCAGAGAGTGGCATCAGCACTGAAGAACTGGCACAACACTGCCAAGAAGCATGTCAAAAACAGTAAGCACACCACTCCATTCTCAAGCAGGCCATCAACCCCTCAATATGGTATGTCTCCAATTCATCTGCTACACAGACACCTTGCTGGAAGAAGTGAGAGTGCACAAACCTCTCCAAGAACATCCAACTATGAAAATGAACAGTGGGATGTTGAAGGCTCACCTTCCCCAAGCCACCATGCAGTAGCTGCTGAAGAAACCCAGATGCAAGTTTTTGAGCCAGGCTCAAGCTCAGCACCAGAATTGCCTATTAGCTCTCAACTTGATATCAGAGTTAGTTCATCAGAGTTTTCCTTTGAGAAGAGACACACTGCTGAAAGTGATTAGATGTGTAGATATTGTTTTTAGTTAACCGGTTCAAATGTACAGTTTCTGTACATATCAAAGTTTCAAATGCATGCATGCTTTTGCTTCAATGCGAAGCCATGCATTTGAAGAATGAGGCATAATCTTTGATTATGGAGCACGATTTTCTGAATGAGGAGTGACACTTTGTTGAAGGCATAATTTGCTGTTGAAGTAAACCAAAGTATAATAAAGGAGATTCATGAAGTAAACAGCTAAAAAACGATGAGTGTGTTTTCGAACCAGTTGTATTGGCGTTGAAAAAAAAATTCTCACATTGTTTTAACTTTTGTGTGTTGGAGCATGTATTTTTCATTAAATGTAAGTTTCAACGCTTAATCAAACAGACATTATATCTATAACGACAAATGGATAGATTTGAATTATTATGTCGGTTAGACCTTAAAAGTAGTAGGATCTCCTTAACAC

Coding sequences of Glyma02g07110

Limit To All Plant Sequences

>Glyma02g07110.1   sequence type=CDS   gene model=Glyma02g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGAAAACCCAAGTTTATGAACGAACTCTGGAGGAAACACCAACATGGGCTGTTGCGGTTGTGTGTTTTGTGCTGCTCGCTGTTTCAATCGTCATAGAACATATTATTCATGGTATTGGAAAGTGGTTCAAAAAGAAACACAAAAATGCTCTTTTTGAAGCCTTGGAAAAGGTGAAAGGAGAGCTTTTGCTGCTAGGATTCCTATCCTTGCTCCTAACTGTGTTGCAAGATGAAATTTCTAAGATATGCGTATCAAAAAATGTTGCATCCACTTGGCATCCATGTGCCAACCCAAAGGCCCCAAAAACATCTCAATCCGAGGATGAATCTGAAGACTTTCAGATCAATTCTAGGAAACTCCTACAATTTTATGACCTCGTACCAAGGCGTGTTCTTGCTACAAAAGGATACGACAAGTGCGATGAAAAGGGAAAAGTTGCTTTTGTTTCAGCATATGGGATTCACCAGCTCCATATATTCATCTTTGTGCTAGCCATTTTTCATATCCTGCAATGCATTGTAACACTGACTTTGGGAAGAACTAAGATGAGAAAGTGGAGGGCATGGGAAAATGAAACCAAGACTATCGAATATCAATTTTATAACGATCCTGAGAGGTTCAGGTTTGCAAGGGACACAACGTTTGGACGAAGGCACTTGAACTCTTGGAGTCAGTCAACAATTTCCTTATCCATAGTTAGCTTCTTCCGACAATTCTTTGGATCTGTGAACAAAGTTGACTATTTAACATTACGACATGGATTCATCACGGCGCATTTGGCACCGGGAAGTGATGCAAGATTTGATTTCCAGAAGTACATCGAAAGATCACTTGAGGAGGATTTTAAAGTAGTAGTGGGAATAAGCCCAATCATATGGTTCTTTGCGGTGCTATTCCTGCTGACTAATACACATGGGTGGTATTCCTATTATTGGCTTCCATTTATCCCATTATTTATAATCTTATTAGTGGGTGCTAAGTTACAAATGATCATAACAAAGATGGGACTGAAGATTACAGACAGAGGAGAAGTTGTCAAAGGTGCACCTGTGGTTGTGCCAGGTGATGATCTGTTCTGGTTCAACCGTCCTGGTCTCCTTCTATTTTTGATTCATCTTGTGCTATTTCAGAATGCTTTTCAACTGGCGTTTTTCTCTTGGAGTACTTATGAATTCTCCATAAACTCCTGCTTCCACGAAACAACAGAAGACATTGTCATAAGACTTGTAATGGGGGTTGTGATACAATTTCTGTGCAGCTATGTGACCTTGCCTCTATATGCTCTAGTCACACAGATGGGTTCAACCATGAAGCCCACCATCTTCAATCAGAGAGTGGCATCAGCACTGAAGAACTGGCACAACACTGCCAAGAAGCATGTCAAAAACAGTAAGCACACCACTCCATTCTCAAGCAGGCCATCAACCCCTCAATATGGTATGTCTCCAATTCATCTGCTACACAGACACCTTGCTGGAAGAAGTGAGAGTGCACAAACCTCTCCAAGAACATCCAACTATGAAAATGAACAGTGGGATGTTGAAGGCTCACCTTCCCCAAGCCACCATGCAGTAGCTGCTGAAGAAACCCAGATGCAAGTTTTTGAGCCAGGCTCAAGCTCAGCACCAGAATTGCCTATTAGCTCTCAACTTGATATCAGAGTTAGTTCATCAGAGTTTTCCTTTGAGAAGAGACACACTGCTGAAAGTGATTAG

>Glyma02g07110.2   sequence type=CDS   gene model=Glyma02g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTTGCATTTGCAGGGAAAAGTTGCTTTTGTTTCAGCATATGGGATTCACCAGCTCCATATATTCATCTTTATGCTAGCTGTTTTTCATATCCTACAATGCATTGTAACACTAGCTTTGGGAAGAACTAATATTGCATATCCTGAGAGGTTCAGGCTTGCAAAGGACACAACATTTGGACAAAGGCACTTGAATACGTGGAGTCAGTCATCAATTTCCTTATGGATAGCTAGCTTCTTCAGACAATTCTCTGGATCTGTTCAGAAAGCACATCTGGCTCCGGGAAGTGATGCAAGATTTGATTTCCAGAAGTATATCAAAAGATCACTTGATGAAGATTTTAAAGTTGTAGTGGGCATAATTGCTAAGCCATATTCAAGTTTTCAATCTGATTTGAATATGACATGGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATTATAATCTTATTAGTGGGTGCTAAGTTACAAATGATCATAACAAAGATGGGACTGAAGATTACAGACAGAGGAGAAGTTGTCAAAGGTGCACCTGTGGTTGTGCCAGGTGATGATCTGTTCTGGTTCAACCGTCCTGGTCTCCTTCTATTTTTGATTCATCTTGTGCTATTTCAGAATGCTTTTCAACTGGCGTTTTTCTCTTGGAGTACTTATGAATTCTCCATAAACTCCTGCTTCCACGAAACAACAGAAGACATTGTCATAAGACTTGTAATGGGGGTTGTGATACAATTTCTGTGCAGCTATGTGACCTTGCCTCTATATGCTCTAGTCACACAGATGGGTTCAACCATGAAGCCCACCATCTTCAATCAGAGAGTGGCATCAGCACTGAAGAACTGGCACAACACTGCCAAGAAGCATGTCAAAAACAGTAAGCACACCACTCCATTCTCAAGCAGGCCATCAACCCCTCAATATGGTATGTCTCCAATTCATCTGCTACACAGACACCTTGCTGGAAGAAGTGAGAGTGCACAAACCTCTCCAAGAACATCCAACTATGAAAATGAACAGTGGGATGTTGAAGGCTCACCTTCCCCAAGCCACCATGCAGTAGCTGCTGAAGAAACCCAGATGCAAGTTTTTGAGCCAGGCTCAAGCTCAGCACCAGAATTGCCTATTAGCTCTCAACTTGATATCAGAGTTAGTTCATCAGAGTTTTCCTTTGAGAAGAGACACACTGCTGAAAGTGATTAG

Predicted protein sequences of Glyma02g07110

Limit To All Plant Sequences

>Glyma02g07110.1   sequence type=predicted peptide   gene model=Glyma02g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEKTQVYERTLEETPTWAVAVVCFVLLAVSIVIEHIIHGIGKWFKKKHKNALFEALEKVKGELLLLGFLSLLLTVLQDEISKICVSKNVASTWHPCANPKAPKTSQSEDESEDFQINSRKLLQFYDLVPRRVLATKGYDKCDEKGKVAFVSAYGIHQLHIFIFVLAIFHILQCIVTLTLGRTKMRKWRAWENETKTIEYQFYNDPERFRFARDTTFGRRHLNSWSQSTISLSIVSFFRQFFGSVNKVDYLTLRHGFITAHLAPGSDARFDFQKYIERSLEEDFKVVVGISPIIWFFAVLFLLTNTHGWYSYYWLPFIPLFIILLVGAKLQMIITKMGLKITDRGEVVKGAPVVVPGDDLFWFNRPGLLLFLIHLVLFQNAFQLAFFSWSTYEFSINSCFHETTEDIVIRLVMGVVIQFLCSYVTLPLYALVTQMGSTMKPTIFNQRVASALKNWHNTAKKHVKNSKHTTPFSSRPSTPQYGMSPIHLLHRHLAGRSESAQTSPRTSNYENEQWDVEGSPSPSHHAVAAEETQMQVFEPGSSSAPELPISSQLDIRVSSSEFSFEKRHTAESD*

>Glyma02g07110.2   sequence type=predicted peptide   gene model=Glyma02g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILHLQGKVAFVSAYGIHQLHIFIFMLAVFHILQCIVTLALGRTNIAYPERFRLAKDTTFGQRHLNTWSQSSISLWIASFFRQFSGSVQKAHLAPGSDARFDFQKYIKRSLDEDFKVVVGIIAKPYSSFQSDLNMTWWYSYYWLPFIPLIIILLVGAKLQMIITKMGLKITDRGEVVKGAPVVVPGDDLFWFNRPGLLLFLIHLVLFQNAFQLAFFSWSTYEFSINSCFHETTEDIVIRLVMGVVIQFLCSYVTLPLYALVTQMGSTMKPTIFNQRVASALKNWHNTAKKHVKNSKHTTPFSSRPSTPQYGMSPIHLLHRHLAGRSESAQTSPRTSNYENEQWDVEGSPSPSHHAVAAEETQMQVFEPGSSSAPELPISSQLDIRVSSSEFSFEKRHTAESD*

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