SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G23620 | AT | Annotation by Michelle Graham. TAIR10: methyl esterase 1 | chr2:10047462-10049248 REVERSE LENGTH=263 | SoyBase | E_val: 1.00E-112 | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009696 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid metabolic process | SoyBase | N/A | ISS |
| GO:0009817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016788 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds | SoyBase | N/A | ISS |
| GO:0080030 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyl indole-3-acetate esterase activity | SoyBase | N/A | ISS |
| GO:0080031 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyl salicylate esterase activity | SoyBase | N/A | ISS |
| GO:0080032 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyl jasmonate esterase activity | SoyBase | N/A | ISS |
| KOG1454 | KOG | Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) | JGI | ISS | |
| PTHR10992 | Panther | ALPHA/BETA HYDROLASE RELATED | JGI | ISS | |
| PTHR10992:SF56 | Panther | gb def: abhydrolase, alpha/beta hydrolase fold [bacillus anthracis a2012] | JGI | ISS | |
| PF00561 | PFAM | alpha/beta hydrolase fold | JGI | ISS | |
| UniRef100_B9S8M5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polyneuridine-aldehyde esterase, putative n=1 Tax=Ricinus communis RepID=B9S8M5_RICCO | SoyBase | E_val: 8.00E-113 | ISS |
| UniRef100_I1JCW8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCW8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g07060 not represented in the dataset |
Glyma02g07060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g26060 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g063500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g07060.2 sequence type=CDS gene model=Glyma02g07060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCAGAAAATTGTATAGATAAGAAGCACTTTGTGCTGGTGCATGGGGCATGCCATGGAGCATGGTGTTGGTATAAGCTCAAGCCACGCTTGGAATCTGCTGGCCACAAGGTCACAGTGCTTGACCTTGCAGCTTCTGGAGCCAACATGAAGAAAATTGAAGATGTTGACACTTTTTCACAGTATACTGAGCCTTTGTTGTTTCTATTGGACACAATTCCCTCAAATGAAAAGGTAGTTCTAGTTGGTCACAGCTTTGGAGGGCTGAACATAGCACTTGCCATGGAGAAATTTCCAGAAAAGGTAGCAGTTGGTGTTTTCCTAACAGCTTTTGCTCCAGACGTTGAACACCACCCATCTTATGTCTTGGAAAAGTACAGCGAGAGGACCCCGTTAGCTGCATGGTTAGACACTGAATTTGCTCCAAGTGGAAACAAAACAACAATGTTCTTTGGCCCCAACTTCTTGTCCGACAAGCTCTACCAACTATCCCCAATTGAGGATTTTGAATTGGCCAAGACTTTAATAAGGCCATCATCACTCTTCATGGAAGACTTGACTAAACAAAAGAACTTCTCCAAAGAGGGATATGGGTCAGTGCCACGTGCCTTTATTGTTTGCACTGAGGACCTTGCAATTCCATTGGAATATCAGCTCTTCATGATCCAAAATGTTGGGTTCAATGAAGTTGTAGAGATCAAAGGCACAGACCATATGGCTATGCTTTGCAAGCCACAAGAACTATTTGATTCCCTCCAGCAGATAGCGACTAAATATGCATGA
>Glyma02g07060.2 sequence type=predicted peptide gene model=Glyma02g07060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSENCIDKKHFVLVHGACHGAWCWYKLKPRLESAGHKVTVLDLAASGANMKKIEDVDTFSQYTEPLLFLLDTIPSNEKVVLVGHSFGGLNIALAMEKFPEKVAVGVFLTAFAPDVEHHPSYVLEKYSERTPLAAWLDTEFAPSGNKTTMFFGPNFLSDKLYQLSPIEDFELAKTLIRPSSLFMEDLTKQKNFSKEGYGSVPRAFIVCTEDLAIPLEYQLFMIQNVGFNEVVEIKGTDHMAMLCKPQELFDSLQQIATKYA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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