Glyma02g06940 - SoyBase

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Report for Sequence Feature Glyma02g06940

Feature Type:	gene_model
Chromosome:	Gm02
Start:	5560365
stop:	5565028
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g06940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66960	AT	Annotation by Michelle Graham. TAIR10: Prolyl oligopeptidase family protein \| chr5:26736209-26739493 REVERSE LENGTH=792	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
GO:0070008	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type exopeptidase activity	SoyBase	N/A	ISS
KOG2237	KOG	Predicted serine protease	JGI		ISS
PTHR11757	Panther	PROTEASE FAMILY S9A OLIGOPEPTIDASE	JGI		ISS
PTHR11757:SF3	Panther	OLIGOPEPTIDASE B (LYSYL AND ARGININYL OLIGOPEPTIDASE)	JGI		ISS
PF00326	PFAM	Prolyl oligopeptidase family	JGI		ISS
PF02897	PFAM	Prolyl oligopeptidase, N-terminal beta-propeller domain	JGI		ISS
UniRef100_B9S8P2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oligopeptidase B, putative n=1 Tax=Ricinus communis RepID=B9S8P2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JCV5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JCV5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g06940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g06940

Paralog	Evidence	Comments
Glyma16g26000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g06940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g062400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g06940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g06940

Limit To All Plant Sequences

>Glyma02g06940.1   sequence type=CDS   gene model=Glyma02g06940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCCCTCTGTTCCGTTTGGCTCAAGTAGCCCGGCGCCACTACAAGGCGTCGTCGCCACCACCACCGAGCCCACCGAAGGCCCCAAAGAAGCCGCAGAAGTTCAGCTTCGACGGCGCAACGTGGGAGGACCCATACAGCTGGATGTCGCAGCTGAACGACAAGGTGGCGATGCGGCACATGGACGTGTGCGTGGAGCAAGAGGAGAAGTACGCCGAGGCCGTCATGTCGGACTCCGATAACCTCCTGAACAAGCTCCACTTTGAGATGGCCTCTCGCATGCCCTTCGACCTCTCCACCCCTCCCCTCCGCTGGGGCCCCTGGCTCTACTACCGCCGCGCCGAAGAAGCCAAACCCTACCCCGTCCTCTGCCGCCGGTTGGCTAGCTTGTACGAAGACTTCATTTCACATAAGTACCCCCCCGCGGGTTTCGATTTCACTACGGGAAAGACCATTGAGCAGAAGCTCCTTGATTACAATCAAGAAGCCCAGAGATTTGGAGGTTATGCTTATGAGGAACTGTCTGAGGTTTCGCCGAATCATCAGTTTCTTGCATATACTATGTATGATAAAGAAAATGACTACTTCAAATTATCCGTGAGAAATTTGAATTCGGGTTCGTTGTGCAGTAAGCCTCAGGCAGATCGAGTTTCCAACTTGGCATGGGCCAAGGATGGACAGGCTCTGCTTTACGTTGTGACAGATAAGAAAATGAGGCCTTACCGTATCTACTACAGTCTGATTGGATCAACTGATGAAGATGTTTTGCTTTTGGAAGAGTCAGATGAAAGTGTTCACGTTAATATTAGGCACACAAAAGACTTTCTATTTGTGACTGTAAATACATTCTCTACCACATCATCAAAGGTCTTTCTAATAAATGCAGCTGACCTGTTGTCTGGCTTGAAACTAGTTTGGGAGTGTGACGCTCTAGCTCACTGCACAATTGAACATCACCGAGGTTACCTTTATTTATTTACAGATGCTCCCAAAGGTGGTCGATCAGTTGATTGTCATTATCTTCTTTTTAGTCCAGTGGATGATCCTTCAAGTACAAGAAAATGGGAGGAGGTATTAGTCGATGACCCAGGTTTGATTATTGAGGATATTGATTTTAGTGATAAATACTTAGCACTCATTGTAAGGGAAGGTCGAAAAGTTCAGCTTTGTTCAGTTGGACTGCCATTGCCCTTTGGGAAGGGAGCAGTTAAACTGAGGAAGCTGGACCTACAGTACTTGCCCATTCCAAGACATGTTTGCCAAATTACGCCTGGACCAAACTATGACTTTTTCTCATCTGTCATGCGCTTTATAATATCATCACCTGTGATGCCAGATGCTGTGGTTGATTATGACCTGGCCACAGGTAAGTGGAACATCATTCAACAGCAAAATGTGCTTCATGACAGGACAAGAATACTGTATGGTAAAAATTCTGCAAGTATTAGTATGGAGTCCTCAAATTCAAAACACTCCAATCCTGTGAATGTTAACTCTGAAGATGACCACTTATGGAATGACCTGTCTGAGTTTTATGCCTGTGAACAATATGAGGTCCCTTCATTTGATGGAGTTTTGATTCCTTTGACTATTGTTTTTGCACGTAACAATAAGATAGAAGCTAAAAAACCTGGGATATTGCATGGACATGGAGCTTATGGTGAATTACTTGACAAACGGTGGCGCAGTGAACTAAAAAGCCTCCTGGATCGAGGTTGGGTTGTTGCCTATGCCGATGTTAGAGGTGGAGGTGGTTTTGGTAAGAAATGGCATAATGACGGAAGACGTACAAAGAAACATAATTCAATCAATGATTACATCTCTTGTGCCAAATTCCTCATTGAAAAAGATATTGTGCATGAAAACAAATTGGCTGGTTGGGGATATAGTGCTGGAGGACTTTTGGTTGCTTCTGCTATTAATCGTTCTCCAGATTTATTTCGTGCTGCAGTCTTGAAGGTTCCCTTTTTAGATGCAACCAACACTCTTCTGTATCCCATCTTGCCACTTATAGCTGCTGACTATGAAGAGTTTGGCTACCCTGGTGACCTTGATGATTTTCTTGCAATTCGAGAATATTCTCCATATGACAATATACGAAAGGATGTTCTTTATCCAGCTGTATTAGTAACCTCATCTTTCAATACACGATTTGGGGTATGGGAAGCAGCAAAATGGGTTGCACGAGTTCGTGATCTCTCAGTTTACGACCCAAAGCGGCCAATATTGCTGAACTTGACCACAGATTTAGTGGAGGAAAACCGTTATTTGCAGTCCAAGGAATCAGCATTAGAGGCCACATTTCTCATTAAGATGATGGAATATTAG

Predicted protein sequences of Glyma02g06940

Limit To All Plant Sequences

>Glyma02g06940.1   sequence type=predicted peptide   gene model=Glyma02g06940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPLFRLAQVARRHYKASSPPPPSPPKAPKKPQKFSFDGATWEDPYSWMSQLNDKVAMRHMDVCVEQEEKYAEAVMSDSDNLLNKLHFEMASRMPFDLSTPPLRWGPWLYYRRAEEAKPYPVLCRRLASLYEDFISHKYPPAGFDFTTGKTIEQKLLDYNQEAQRFGGYAYEELSEVSPNHQFLAYTMYDKENDYFKLSVRNLNSGSLCSKPQADRVSNLAWAKDGQALLYVVTDKKMRPYRIYYSLIGSTDEDVLLLEESDESVHVNIRHTKDFLFVTVNTFSTTSSKVFLINAADLLSGLKLVWECDALAHCTIEHHRGYLYLFTDAPKGGRSVDCHYLLFSPVDDPSSTRKWEEVLVDDPGLIIEDIDFSDKYLALIVREGRKVQLCSVGLPLPFGKGAVKLRKLDLQYLPIPRHVCQITPGPNYDFFSSVMRFIISSPVMPDAVVDYDLATGKWNIIQQQNVLHDRTRILYGKNSASISMESSNSKHSNPVNVNSEDDHLWNDLSEFYACEQYEVPSFDGVLIPLTIVFARNNKIEAKKPGILHGHGAYGELLDKRWRSELKSLLDRGWVVAYADVRGGGGFGKKWHNDGRRTKKHNSINDYISCAKFLIEKDIVHENKLAGWGYSAGGLLVASAINRSPDLFRAAVLKVPFLDATNTLLYPILPLIAADYEEFGYPGDLDDFLAIREYSPYDNIRKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRDLSVYDPKRPILLNLTTDLVEENRYLQSKESALEATFLIKMMEY*

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