Warning : Undefined variable $sxsome in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $sstart in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $send in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma02g06820): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1019
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma02g06820): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1021
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1025
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1031
Report for Sequence Feature Glyma02g06820
Feature Type: gene_model
Chromosome: Gm02
Start: 5483213
stop: 5485766
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g06820
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G50810 AT
Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr3:18889002-18889868 REVERSE LENGTH=154
SoyBase E_val: 5.00E-32 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF04535 PFAM
Domain of unknown function (DUF588)
JGI ISS
UniRef100_G7ZYV2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Histone-lysine N-methyltransferase SETDB1 (Fragment) n=1 Tax=Medicago truncatula RepID=G7ZYV2_MEDTR
SoyBase E_val: 2.00E-44 ISS
UniRef100_I1JCU6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCU6_SOYBN
SoyBase E_val: 2.00E-114 ISS
Expression Patterns of Glyma02g06820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g06820
Paralog Evidence Comments
Glyma16g25850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g06820 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g061000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g06820
Transcripts of Glyma02g06820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g06820.3 sequence type=transcript gene model=Glyma02g06820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CAAAACCACTGAACCTAATTCTATACGTGAAAAAAAACATTAAAGGCTGAGAAGAGCCCACACCTACTTCATGTTTAATTTTAACTATAACAAAGAAAAAGAACTCATTCCCCTTTTCAATTTCACCACCAATTTTTCAGATTAATCATCAAATTAATTAATTATCATAATTGTTCATTTATGCCTTTCGTAACTCTTACCCAAACAAACATACACATAACATTCAGCATTCATAATTTCATAGTCCTACCTTTTTTCTTTTTTTTTTTTCTCTCAACGTTATTATAATACATTTTATTGTTATTATTATTATTACCACAACTCTAAAAAAGGTGGTTGAGTTGATGTTACGGGCATGTTTGGGGTTGAATTACTATGGTAGAATGGAGGAGCTGCCAGGGGCGTTTGGAAGCAGCGCCAGTTTGGCTCTCCGTTTGGGCCAAACAGTCTTTTCCACAGCTTCCCTTCTCTTCATGTGCTTGGATGTTGATTTCTATGGCTACACTGCTTTCTGCTATTTGGTAACCGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTTGGTTGTAGATGCATACTCTGTCTTTATAAAATGTTTACCCCTCCAACGAAGACTCATAATGATCGTCTTTCTGGGAGACATGTTTTTCTACACACCAGATTTTGTCATATCTCTCATTAGCTGCAGCGTGTTCAACAGCCAGTGTCACAGATCTCCTGCTCGATGCCGATCGATCCTATTGCCTGCCAAAGTTGTGTGGTAGATATCAATTATCTGCTGCTATGGCCTTCTTGTCTTGGTTTCTTTCATCAGCATCCTGTCTGTTTAACTTTTGGCTTTTCCCTTCTTTGTAAAATCTATCTTTCTGCTAGCTGTTGATATGTACACCAATGATAAGGGTGCAAATGACGAAGTCATTTGTTCTTGTGCAGATATTTTTTGTTTCCACGTGAATAAAATTATCATGACAACAATGTAATAAGTACTTTTCCAATGCAAGAGAAATACAAAAGTTTCAAATATTGGTTCTCAACTGGTTCCTTCTTTTATATTGTTGAAGTTTTGAACATGATGCTTAGTTGATAACAAAAGAGACTTGTGAGACCGATT
>Glyma02g06820.4 sequence type=transcript gene model=Glyma02g06820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CCTACCTTTTTTCTTTTTTTTTTTTCTCTCAACGTTATTATAATACATTTTATTGTTATTATTATTATTACCACAACTCTAAAAAAGGTGGTTGAGTTGATGTTACGGGCATGTTTGGGGTTGAATTACTATGGTAGAATGGAGGAGCTGCCAGGGGCGTTTGGAAGCAGCGCCAGTTTGGCTCTCCGTTTGGGCCAAACAGTCTTTTCCACAGCTTCCCTTCTCTTCATGTGCTTGGATGTTGATTTCTATGGCTACACTGCTTTCTGCTATTTGGTAACCGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTTGGTTGTAGATGCATACTCTGTCTTTATAAAATGTTTACCCCTCCAACGAAGACTCATAATGATCGTCTTTCTGGGAGACATGCGTGTTCAACAGCCAGTGTCACAGATCTCCTGCTCGATGCCGATCGATCCTATTGCCTGCCAAAGTTGTGTGGTAGATATCAATTATCTGCTGCTATGGCCTTCTTGTCTTGGTTTCTTTCATCAGCATCCTGTCTGTTTAACTTTTGGCTTTTCCCTTCTTTGTAAAATCTATCTTTCTGCTAGCTGTTGATATGTACACCAATGATAAGGGTGCAAATGACGAAGTCATTTGTTCTTGTGCAGATATTTTTTGTTTCCACGTGAATAAAATTATCATGACAACAATGTAATAAGTACTTTTCCAATGCAAGAGAAATACAAAAGTTTCAAATATTGGTTCTCAA
Coding sequences of Glyma02g06820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g06820.1 sequence type=CDS gene model=Glyma02g06820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTACGGGCATGTTTGGGGTTGAATTACTATGGTAGAATGGAGGAGCTGCCAGGGGCGTTTGGAAGCAGCGCCAGTTTGGCTCTCCGTTTGGGCCAAACAGTCTTTTCCACAGCTTCCCTTCTCTTCATGTGCTTGGATGTTGATTTCTATGGCTACACTGCTTTCTGCTATTTGGTAACCGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTTGGTTGTAGATGCATACTCTGTCTTTATAAAATGTTTACCCCTCCAACGAAGACTCATAATGATCGTCTTTCTGGGAGACATGATTTTGTCATATCTCTCATTAGCTGCAGCGTGTTCAACAGCCAGTGTCACAGATCTCCTGCTCGATGCCGATCGATCCTATTGCCTGCCAAAGTTGTGTGGTAGATATCAATTATCTGCTGCTATGGCCTTCTTGTCTTGGTTTCTTTCATCAGCATCCTGTCTGTTTAACTTTTGGCTTTTCCCTTCTTTGTAA
>Glyma02g06820.3 sequence type=CDS gene model=Glyma02g06820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTACGGGCATGTTTGGGGTTGAATTACTATGGTAGAATGGAGGAGCTGCCAGGGGCGTTTGGAAGCAGCGCCAGTTTGGCTCTCCGTTTGGGCCAAACAGTCTTTTCCACAGCTTCCCTTCTCTTCATGTGCTTGGATGTTGATTTCTATGGCTACACTGCTTTCTGCTATTTGGTAACCGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTTGGTTGTAGATGCATACTCTGTCTTTATAAAATGTTTACCCCTCCAACGAAGACTCATAATGATCGTCTTTCTGGGAGACATGTTTTTCTACACACCAGATTTTGTCATATCTCTCATTAGCTGCAGCGTGTTCAACAGCCAGTGTCACAGATCTCCTGCTCGATGCCGATCGATCCTATTGCCTGCCAAAGTTGTGTGGTAG
>Glyma02g06820.4 sequence type=CDS gene model=Glyma02g06820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CCTACCTTTTTTCTTTTTTTTTTTTCTCTCAACGTTATTATAATACATTTTATTGTTATTATTATTATTACCACAACTCTAAAAAAGGTGGTTGAGTTGATGTTACGGGCATGTTTGGGGTTGAATTACTATGGTAGAATGGAGGAGCTGCCAGGGGCGTTTGGAAGCAGCGCCAGTTTGGCTCTCCGTTTGGGCCAAACAGTCTTTTCCACAGCTTCCCTTCTCTTCATGTGCTTGGATGTTGATTTCTATGGCTACACTGCTTTCTGCTATTTGGTAACCGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTTGGTTGTAGATGCATACTCTGTCTTTATAAAATGTTTACCCCTCCAACGAAGACTCATAATGATCGTCTTTCTGGGAGACATGCGTGTTCAACAGCCAGTGTCACAGATCTCCTGCTCGATGCCGATCGATCCTATTGCCTGCCAAAGTTGTGTGGTAGATATCAATTATCTGCTGCTATGGCCTTCTTGTCTTGGTTTCTTTCATCAGCATCCTGTCTGTTTAACTTTTGGCTTTTCCCTTCTTTGTAAAATCTATCTTTCTGCTAGCTGTTGA
Predicted protein sequences of Glyma02g06820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g06820.1 sequence type=predicted peptide gene model=Glyma02g06820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLRACLGLNYYGRMEELPGAFGSSASLALRLGQTVFSTASLLFMCLDVDFYGYTAFCYLVTVMGLVIPWSITLLVVDAYSVFIKCLPLQRRLIMIVFLGDMILSYLSLAAACSTASVTDLLLDADRSYCLPKLCGRYQLSAAMAFLSWFLSSASCLFNFWLFPSL*
>Glyma02g06820.3 sequence type=predicted peptide gene model=Glyma02g06820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLRACLGLNYYGRMEELPGAFGSSASLALRLGQTVFSTASLLFMCLDVDFYGYTAFCYLVTVMGLVIPWSITLLVVDAYSVFIKCLPLQRRLIMIVFLGDMFFYTPDFVISLISCSVFNSQCHRSPARCRSILLPAKVVW*
>Glyma02g06820.4 sequence type=predicted peptide gene model=Glyma02g06820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
PTFFLFFFSLNVIIIHFIVIIIITTTLKKVVELMLRACLGLNYYGRMEELPGAFGSSASLALRLGQTVFSTASLLFMCLDVDFYGYTAFCYLVTVMGLVIPWSITLLVVDAYSVFIKCLPLQRRLIMIVFLGDMRVQQPVSQISCSMPIDPIACQSCVVDINYLLLWPSCLGFFHQHPVCLTFGFSLLCKIYLSASC*