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Report for Sequence Feature Glyma02g06700

Feature Type:gene_model
Chromosome:Gm02
Start:5317513
stop:5319765
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g06700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G23770AT Annotation by Michelle Graham. TAIR10: protein kinase family protein / peptidoglycan-binding LysM domain-containing protein | chr2:10120242-10122080 REVERSE LENGTH=612 SoyBaseE_val: 2.00E-173ISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0071219GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to molecule of bacterial origin SoyBaseN/AISS
GO:0071323GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to chitin SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0008061GO-mf Annotation by Michelle Graham. GO Molecular Function: chitin binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF481Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF01476PFAM LysM domain JGI ISS
UniRef100_A3FMG8UniRef Annotation by Michelle Graham. Most informative UniRef hit: LysM-domain containing receptor-like kinase n=1 Tax=Sesbania rostrata RepID=A3FMG8_SESRO SoyBaseE_val: 0ISS
UniRef100_I1JCT5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JCT5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g06700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g06700 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g059700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g06700
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g06700
>Glyma02g06700.1   sequence type=CDS   gene model=Glyma02g06700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCTCTTTCCTATGATCACAACAACAATCTTCACTTTGATTATGTTATGTAGCATGTCAGTGGTGGTTCATGTTCAGGGAAAGCAACCTTACGTTGGTTTGGCCACAACAGCATGTGGCCAAACGGGAAATTCAAACTCTATGCGTGGCTACACTTGCAATGGCGTGAATCCTAGTTGCCAAGCTTACCTCACCTTCAGGGCTCAACCCCTTTACAACACTGTTCCCTCAATATCTGCTTTGTTGGGTTCAGACTCATCTCAACTTTCTGTGGCAAATTCTGTTTCTGAGGATGGAACCTTTGAAACAAACAAGTTAGTGATTGTTCCAATCAATTGCTCTTGTTCAGGTAACAACAACAACCAGTATTATCAGTTCAACACATCCTACGAGGTTGAAAGAGGGGACTCGTATTTTGTGATCGCTAACAACACTTTTGAAGGCCTTTCAACATGTCAAGCATTGCAGGACCAAAACAACATTCCCGAAGGAGACTTAATGCCGGGAAATGAACTCATTGTTCCTCTTCGATGCGCTTGTCCCTCGAAGAATCAAACTGAGCAAGGTGTCAAGTACTTGTTGAGTTACCTTGTGGCTTCTAATCACATTGTTTGGCTCATTGGTGAAAGATTTGGTGTCAGCAGTGAGACAATTGTTGAAGCTAATACTCTTTCTTCTCAACAACCAATAATTCATCCTTTTACCACACTTCTTGTACCTCTTCAAGACGAGCCCTCGAGTAATCAAACTTCTGAGCCATCTCCACCACCATCAACACCTCCACCTCCGCCTCTATCTTCTTCTAGTGGAAGATCAAGCAAAACATGGGTGTATGCAGTGGTAGGAGTTGTTGGAGCTATTGCATTAATATCATCAGTCCTTTGTGCCATCGTTTTCAGGACGCGTTATCTCAAGGGTGGTAATAAAAGGAAAGATGATTCTTTGATTGTGTCTGATAGTTTTGTGGCTGTGGCTATTGAGAAACCACAAGAGAAGAAGTTGGAAGAAGAAGAATCTGAAAATTTGGCAGAGATCATATCTGGCATAAGTGAATCATTTAAGGTGTACAGATATGAGGAACTGCAAAGTGCAACGAATGGTTTTAGTCCTAGCTGCTGCATCAAAGGGTCGGTTTATCGCGGTTTCATCAATGGGGATTTGGCTGCAATAAAAAAGATAGATGGTGATGTGTCAAAGGAGATAGAGCTTTTGAGCAAAGTGAACCATTCAAATGTTATACGTCTTTCTGGGGTTTGTTTTAACGGGGGCTATTGGTATCTTGTTTATGAGTATGCTGCTAACGGATACTTGAGTGATTGGATCAACATCAAGGGAAAGTTTCTGAGTTGGACACAAAGAATTCAAATTGCATTGGATGTTGCTACAGGACTTGACTATCTTCATAGTTTCACTTCTCCTCCTCATGTACACAAGGATCTGAAGAGTGGTAACATTCTTCTGGATAGTGATTTCAGGGCAAAGATTTCAAACTTTAGGCTTGCAAGGTCAGTGGAAAGAGAGGGTAGTGAGGGTGATCAATATGTGATGACAAGGCATATTGTTGGGACAAGAGGATACATGGCTCCAGAGTATTTGGAAAATGGTCTTGTGTCTACAAAGCTTGATGTCTACGCATTTGGGGTTTTAATGTTGGAAATGCTCACTGGAAAAGATGTTGCTGATGTTTATGCAGAAGGAAATATTGCGAATTTGTTTGATGTTTTAAGCGCGGTGCTTGACGAGGAAGGTGAACATTTGAGATTGAGTGAGTTCATGGATCCCTCTTTGAAAGGAAATTATCCAATGGAACTTGCTGTGTTTGTGGCTAGAATGATAGAAACTTGCATAAAGAAAGATCCAGCAAGTCGACCTGACATGCACGAGATTGTGTCATCTTTGTCCAAAGCCTTGGATTCTTCATTGAGATGGGAAACGTCTATGGAAAGGAAGTTTAGATTCTACAAAGGGTTCCTCAATTAG
Predicted protein sequences of Glyma02g06700
>Glyma02g06700.1   sequence type=predicted peptide   gene model=Glyma02g06700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLFPMITTTIFTLIMLCSMSVVVHVQGKQPYVGLATTACGQTGNSNSMRGYTCNGVNPSCQAYLTFRAQPLYNTVPSISALLGSDSSQLSVANSVSEDGTFETNKLVIVPINCSCSGNNNNQYYQFNTSYEVERGDSYFVIANNTFEGLSTCQALQDQNNIPEGDLMPGNELIVPLRCACPSKNQTEQGVKYLLSYLVASNHIVWLIGERFGVSSETIVEANTLSSQQPIIHPFTTLLVPLQDEPSSNQTSEPSPPPSTPPPPPLSSSSGRSSKTWVYAVVGVVGAIALISSVLCAIVFRTRYLKGGNKRKDDSLIVSDSFVAVAIEKPQEKKLEEEESENLAEIISGISESFKVYRYEELQSATNGFSPSCCIKGSVYRGFINGDLAAIKKIDGDVSKEIELLSKVNHSNVIRLSGVCFNGGYWYLVYEYAANGYLSDWINIKGKFLSWTQRIQIALDVATGLDYLHSFTSPPHVHKDLKSGNILLDSDFRAKISNFRLARSVEREGSEGDQYVMTRHIVGTRGYMAPEYLENGLVSTKLDVYAFGVLMLEMLTGKDVADVYAEGNIANLFDVLSAVLDEEGEHLRLSEFMDPSLKGNYPMELAVFVARMIETCIKKDPASRPDMHEIVSSLSKALDSSLRWETSMERKFRFYKGFLN*






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