SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36850 | AT | Annotation by Michelle Graham. TAIR10: PQ-loop repeat family protein / transmembrane family protein | chr4:17353415-17355822 REVERSE LENGTH=392 | SoyBase | E_val: 8.00E-162 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| KOG2913 | KOG | Predicted membrane protein | JGI | ISS | |
| PTHR16201 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR16201:SF10 | Panther | gb def: unknown protein [arabidopsis thaliana] | JGI | ISS | |
| PF04193 | PFAM | PQ loop repeat | JGI | ISS | |
| UniRef100_C6TMI0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TMI0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7LFJ3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein, putative n=1 Tax=Medicago truncatula RepID=G7LFJ3_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma02g06650 not represented in the dataset |
Glyma02g06650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g25700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g059500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g06650.2 sequence type=transcript gene model=Glyma02g06650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCCATGTCTTGTTATGTAATTTCAAGGCCTCTCTTTCCTTCCTATATATAAAACCAGCCTCCTGTATCTCTTTGCGCCAAGCACCTTAGTTTTCTCAGTTGAACCTCGCACACCACAAAGAGAAAAGAAAGAAGAAAGATAAATTGAGAGAGAGAGAGAATAATGCCACCTTCTTACTGCGTGAATGAGAGAAAACCATGTGTGAGATGGGTGGAGAAATATTTCAAAGATTGCCTTTGCAATTTGAAAGATGAAATCTCGTTTAGTTTCGGGCTCACAAGTCTAGTGTTCTGGGGTGTAGCTGAAATTCCTCAAATAATAACCATTTTTCGTACCAAGAAAAGCCATGGAGTTTCCCTTGTCTTTCTCCTCACTTGGGTTGCTGGGGATATATGCAATTTGACGGGATGCATTCTTGAACCAGCTACTTTGCCAACACAGTACTACACAGCTCTGCTTTACACGATCACTACGATCGTATTACTACTGCTAATAGTATATTATGACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCGTAAGGGATCACGAAGAAGAGAAAAAACCATTGAAGCCACCGAAACCCACTAACAAATCTGGAATCCCAATACCAAATGGCTCACCCAAGGCAGCACCTAGACAGGAGTACTATTATATGTCAGCAAGATCATTGGCTGGGAGTGGCACTCCACCCTGGGGAATCTACATGAGAGCTGCTAAAAGTGGTCCTTCAGCCATCGAATCGATCGATGACTCTTCTTCCGATGACGAAGCACCTCCTGCTTCCTCAAATAATTCTGCATCCCAAGCTATGCCAATCCCACGTTCTGTTGCTGGAAGTTATGGAACATTTCTAGCAGCTGCTGTTAATTTGCCTCTCAAGGGTAATGCTTTGAGGCAAGGATACATAGGATATGGTGGAAGAAAACTTTTGCAGGAGTACGAGAAACATAGTACATTTGGTCAATGGCTGGGATGGCTCATGGCTGCTATCTATATAAGTGGTCGAGTTCCTCAAATATGGTTGAATGTAAGTGTCAAAATAAACCTTTTTTTTTTCAGGTTTGAACTATATTCTTTTTAACTTTGATTATATTTTCATACATGCTTTGTTATTACTGATAAGTTATTGTCCTCAATTGTTAATTGATCAGATTAAAAGAAGCAGTGTGGAGGTAATACTCAATTAATCTTAAACTCTTGCTTTCTGATTACGAATTATGTGTGCAAAGATTAACTATCTCCACATTTTTATTTATGCTTTCCCTTTTTATCTCAACAGGGCTTAAATCCTTTCATGTTCGTCTTCGCATTGGTTGCTAATGTCACTTACGTGGGAAGTATTCTTGTAAGAACCACAGAATGGGAAAGCATCAAAGCTAATATGCCATGGTTATTGGATGCCGTAATTTGCGTGGCATTGGACATTTTCATAATATCGCAATACATCTACTACAGATACTTTCGAAGGAGAGAAGCAAAAGATGATTATAAAGAAGCGGGAAAAGTTGCTGCATCTTGATTTTTGTAGCTGTGTGCTGTAACCAATTGATATTGGATTGAAAACTTAATGGGCACCTTCACAAAACTGAGATATTAGCGTACATTCTTCGTGAGAAGTATGTATGCTGCTAATGTTTATGTAGGGATTATGGGAAATTAGTACACACCCATAGGATATGCATGTTTAGTTGTTGAAGACATGATAGTCGCTACTTTGAAGTGGTTTTGTTGATCCAATAACTGACAAGCTTGTTGGAGGACTATGCTAGGACTTCCTCTTGTAGTTGATACAGCATCACAACTCTCAATTCAACTATGTGCTCTGTAGTTTACACTCCTTCATCACAACTTTCAATTCAATAAAACATACACCTAATAATTACTATTTGAACTAATGGATTATAAAGTATTTTGGATGATTCATCATTCTTCCAATGACAAATGATGACGCAATTCAATTAATCCA
>Glyma02g06650.1 sequence type=CDS gene model=Glyma02g06650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCACCTTCTTACTGCGTGAATGAGAGAAAACCATGTGTGAGATGGGTGGAGAAATATTTCAAAGATTGCCTTTGCAATTTGAAAGATGAAATCTCGTTTAGTTTCGGGCTCACAAGTCTAGTGTTCTGGGGTGTAGCTGAAATTCCTCAAATAATAACCATTTTTCGTACCAAGAAAAGCCATGGAGTTTCCCTTGTCTTTCTCCTCACTTGGGTTGCTGGGGATATATGCAATTTGACGGGATGCATTCTTGAACCAGCTACTTTGCCAACACAGTACTACACAGCTCTGCTTTACACGATCACTACGATCGTATTACTACTGCTAATAGTATATTATGACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCGTAAGGGATCACGAAGAAGAGAAAAAACCATTGAAGCCACCGAAACCCACTAACAAATCTGGAATCCCAATACCAAATGGCTCACCCAAGGCAGCACCTAGACAGGAGTACTATTATATGTCAGCAAGATCATTGGCTGGGAGTGGCACTCCACCCTGGGGAATCTACATGAGAGCTGCTAAAAGTGGTCCTTCAGCCATCGAATCGATCGATGACTCTTCTTCCGATGACGAAGCACCTCCTGCTTCCTCAAATAATTCTGCATCCCAAGCTATGCCAATCCCACGTTCTGTTGCTGGAAGTTATGGAACATTTCTAGCAGCTGCTGTTAATTTGCCTCTCAAGGGTAATGCTTTGAGGCAAGGATACATAGGATATGGTGGAAGAAAACTTTTGCAGGAGTACGAGAAACATAGTACATTTGGTCAATGGCTGGGATGGCTCATGGCTGCTATCTATATAAGTGGTCGAGTTCCTCAAATATGGTTGAATATTAAAAGAAGCAGTGTGGAGGGCTTAAATCCTTTCATGTTCGTCTTCGCATTGGTTGCTAATGTCACTTACGTGGGAAGTATTCTTGTAAGAACCACAGAATGGGAAAGCATCAAAGCTAATATGCCATGGTTATTGGATGCCGTAATTTGCGTGGCATTGGACATTTTCATAATATCGCAATACATCTACTACAGATACTTTCGAAGGAGAGAAGCAAAAGATGATTATAAAGAAGCGGGAAAAGTTGCTGCATCTTGA >Glyma02g06650.2 sequence type=CDS gene model=Glyma02g06650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCACCTTCTTACTGCGTGAATGAGAGAAAACCATGTGTGAGATGGGTGGAGAAATATTTCAAAGATTGCCTTTGCAATTTGAAAGATGAAATCTCGTTTAGTTTCGGGCTCACAAGTCTAGTGTTCTGGGGTGTAGCTGAAATTCCTCAAATAATAACCATTTTTCGTACCAAGAAAAGCCATGGAGTTTCCCTTGTCTTTCTCCTCACTTGGGTTGCTGGGGATATATGCAATTTGACGGGATGCATTCTTGAACCAGCTACTTTGCCAACACAGTACTACACAGCTCTGCTTTACACGATCACTACGATCGTATTACTACTGCTAATAGTATATTATGACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCGTAAGGGATCACGAAGAAGAGAAAAAACCATTGAAGCCACCGAAACCCACTAACAAATCTGGAATCCCAATACCAAATGGCTCACCCAAGGCAGCACCTAGACAGGAGTACTATTATATGTCAGCAAGATCATTGGCTGGGAGTGGCACTCCACCCTGGGGAATCTACATGAGAGCTGCTAAAAGTGGTCCTTCAGCCATCGAATCGATCGATGACTCTTCTTCCGATGACGAAGCACCTCCTGCTTCCTCAAATAATTCTGCATCCCAAGCTATGCCAATCCCACGTTCTGTTGCTGGAAGTTATGGAACATTTCTAGCAGCTGCTGTTAATTTGCCTCTCAAGGGTAATGCTTTGAGGCAAGGATACATAGGATATGGTGGAAGAAAACTTTTGCAGGAGTACGAGAAACATAGTACATTTGGTCAATGGCTGGGATGGCTCATGGCTGCTATCTATATAAGTGGTCGAGTTCCTCAAATATGGTTGAATGTAAGTGTCAAAATAAACCTTTTTTTTTTCAGGTTTGAACTATATTCTTTTTAA
>Glyma02g06650.1 sequence type=predicted peptide gene model=Glyma02g06650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPPSYCVNERKPCVRWVEKYFKDCLCNLKDEISFSFGLTSLVFWGVAEIPQIITIFRTKKSHGVSLVFLLTWVAGDICNLTGCILEPATLPTQYYTALLYTITTIVLLLLIVYYDYISRWYKHRQKVNLVRDHEEEKKPLKPPKPTNKSGIPIPNGSPKAAPRQEYYYMSARSLAGSGTPPWGIYMRAAKSGPSAIESIDDSSSDDEAPPASSNNSASQAMPIPRSVAGSYGTFLAAAVNLPLKGNALRQGYIGYGGRKLLQEYEKHSTFGQWLGWLMAAIYISGRVPQIWLNIKRSSVEGLNPFMFVFALVANVTYVGSILVRTTEWESIKANMPWLLDAVICVALDIFIISQYIYYRYFRRREAKDDYKEAGKVAAS* >Glyma02g06650.2 sequence type=predicted peptide gene model=Glyma02g06650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPPSYCVNERKPCVRWVEKYFKDCLCNLKDEISFSFGLTSLVFWGVAEIPQIITIFRTKKSHGVSLVFLLTWVAGDICNLTGCILEPATLPTQYYTALLYTITTIVLLLLIVYYDYISRWYKHRQKVNLVRDHEEEKKPLKPPKPTNKSGIPIPNGSPKAAPRQEYYYMSARSLAGSGTPPWGIYMRAAKSGPSAIESIDDSSSDDEAPPASSNNSASQAMPIPRSVAGSYGTFLAAAVNLPLKGNALRQGYIGYGGRKLLQEYEKHSTFGQWLGWLMAAIYISGRVPQIWLNVSVKINLFFFRFELYSF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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