SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G50760 | AT | Annotation by Michelle Graham. TAIR10: galacturonosyltransferase-like 2 | chr3:18868074-18869099 FORWARD LENGTH=341 | SoyBase | E_val: 5.00E-177 | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009620 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fungus | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0016051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| GO:0047262 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity | SoyBase | N/A | ISS |
| PTHR13778 | Panther | GLYCOSYL TRANSFERASE-RELATED | JGI | ISS | |
| PF01501 | PFAM | Glycosyl transferase family 8 | JGI | ISS | |
| UniRef100_G7LFJ2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase family GT8 protein n=1 Tax=Medicago truncatula RepID=G7LFJ2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JCT1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JCT1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g06640 not represented in the dataset |
Glyma02g06640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g059400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g06640.1 sequence type=CDS gene model=Glyma02g06640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACCACCTTCATTCTTCTTCGTTTTCTTTTTCATCTTAATATTCTCATGCACCAGCGCCACCACCACCCAACAACAGCGTTTCAAAGAAGCTCCAAAATTCTACAACTCCCCCACGTGCGCCACCCTCCGCCACCACCCGAACCCAAACCACACGTGCCCCGACAACGCTGTCCACGTGGCAATGACCCTCGACGTTTCCTACCTCCGAGGTTCCATGGCCGCAATCCTCTCCGTTCTGCAACACACCTCATGCCCCGAAAATGTGATCTTCCACTTCGTCACCGCAGCTTCTAAATCTTCCTCCGCCGCAAAGCTAAACCAAACGCTAACCACCTCCTTCCCCTACCTGAATTTCCAAATCTACCCCTTCGACGACGACGCCGTTTCGCGCCTCATCTCCACCTCCATCCGCTCAGCACTGGATTGCCCCCTCAACTACGCAAGAAGCTACCTCTCCACCCTCCTCCCTCCCTGCGTCGCGAAAATCGTCTACCTCGACTCGGACTTGATCCTCGTCGACGACATCTCGAAGCTCGCGGAGACACCGCTCTCTGGCACGGCGGTGCTCGCCGCGCCGGAGTACTGCTCCGCGAACTTCTCGGCGTACTTCACGCCCTCGTTCTGGTCCAACCCCTCGCTGTCGCTTGTCCTCGCTAACCGCCGGAGGCCACCGTGCTACTTCAACACGGGCGTAATGGTGATCGACCTCCGGCAATGGCGCGAGGGCGAGTACACGACCGAGATCGAGGAGTGGATGGAGCTGCAGAAGAGGATGCGGATCTACGAGCTTGGCTCACTGCCGCCGTTCCTGCTGGTGTTCGCCGGGAGAATTGCGGCGGTGGACCACCGGTGGAACCAGCACGGGCTCGGCGGAGATAACTTCCGCGGGCTTTGCCGAGACCTTCACCCCGGGCCCGTGAGCCTGCTGCATTGGAGTGGCAAAGGGAAGCCGTGGGCCAGGCTTGACGCCGGCAGGCCTTGCCCTTTGGACGCATTGTGGGCTCCCTACGATCTGCTCGAGACTCGTTTCGCTGCTCTTCAAGCGTAA
>Glyma02g06640.1 sequence type=predicted peptide gene model=Glyma02g06640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPPSFFFVFFFILIFSCTSATTTQQQRFKEAPKFYNSPTCATLRHHPNPNHTCPDNAVHVAMTLDVSYLRGSMAAILSVLQHTSCPENVIFHFVTAASKSSSAAKLNQTLTTSFPYLNFQIYPFDDDAVSRLISTSIRSALDCPLNYARSYLSTLLPPCVAKIVYLDSDLILVDDISKLAETPLSGTAVLAAPEYCSANFSAYFTPSFWSNPSLSLVLANRRRPPCYFNTGVMVIDLRQWREGEYTTEIEEWMELQKRMRIYELGSLPPFLLVFAGRIAAVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDAGRPCPLDALWAPYDLLETRFAALQA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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