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Report for Sequence Feature Glyma02g06560

Feature Type:gene_model
Chromosome:Gm02
Start:5222556
stop:5224612
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g06560
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36740AT Annotation by Michelle Graham. TAIR10: homeobox protein 40 | chr4:17314649-17316314 REVERSE LENGTH=216 SoyBaseE_val: 1.00E-58ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000976GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region sequence-specific DNA binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG0483 KOG Transcription factor HEX, contains HOX and HALZ domains JGI ISS
PTHR24326Panther FAMILY NOT NAMED JGI ISS
PTHR24326:SF219Panther JGI ISS
PF00046PFAM Homeobox domain JGI ISS
UniRef100_G7KC72UniRef Annotation by Michelle Graham. Most informative UniRef hit: Homeodomain leucine zipper protein n=1 Tax=Medicago truncatula RepID=G7KC72_MEDTR SoyBaseE_val: 1.00E-70ISS
UniRef100_I1JCS5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JCS5_SOYBN SoyBaseE_val: 5.00E-128ISS

Expression Patterns of Glyma02g06560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g06560 not represented in the dataset
Glyma02g06560 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g06560 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g058900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g06560
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g06560
>Glyma02g06560.2   sequence type=CDS   gene model=Glyma02g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCATCAACTTATCGAAGACCATATGATGCTCTTCCCTTGGCTATGCCCTGGTGGTGCATTCACTGAAGTAACTCCTCAACAAGGGGAAAATAATAAGCCAAGGCACAAGCGAAATAGAAAGAATAGAGGAGGAGAAAATGGCACCATCATCACCAAGAAGAGAAAGCTCACCGTAGAGCAAATTAGTCTTCTTGAGCGAAATTTTAGCAATGAACATAAACTTGAGTCTGAAAGGAAGGACCAGCTCGCATTGGAGCTTAGTTTGGACCCTCGACAAGTTGCGGTGTGGTTTCAAAATAGACGTTCTCGTTGGAAGACTCAAAAATTGGAGGAAGAGTACTCCAATCTTAAGAATGTTCATGAAACCACTATGCTCGACAAATGTCATCTTGAGAATGAGGTGTTGAAGCTCAAGGAGCAGCTTTTGGAAACAAAGAAGGAGATTGAGCAGCTACTAGAGCGTGGTGAAAAAGCCCCAAGCAACAACTCCAGTTCCTCACAGTCAATGGAAGAAGCTGTGAACCCACCATTTCTTGGAGAGTTTAGGGTGGAAGAATATGATGATGGTGATGTGTTCTACATTCCAGAGACTCATCACATCAATGGGATGGAATGGATTAATCTGTACAATTGA
Predicted protein sequences of Glyma02g06560
>Glyma02g06560.2   sequence type=predicted peptide   gene model=Glyma02g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNHQLIEDHMMLFPWLCPGGAFTEVTPQQGENNKPRHKRNRKNRGGENGTIITKKRKLTVEQISLLERNFSNEHKLESERKDQLALELSLDPRQVAVWFQNRRSRWKTQKLEEEYSNLKNVHETTMLDKCHLENEVLKLKEQLLETKKEIEQLLERGEKAPSNNSSSSQSMEEAVNPPFLGEFRVEEYDDGDVFYIPETHHINGMEWINLYN*






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