Glyma02g06440 - SoyBase

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Report for Sequence Feature Glyma02g06440

Feature Type:	gene_model
Chromosome:	Gm02
Start:	5129627
stop:	5133446
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g06440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G50690	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein \| chr3:18835271-18837097 REVERSE LENGTH=447	SoyBase	E_val: 2.00E-110	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG2739	KOG	Leucine-rich acidic nuclear protein	JGI		ISS
PTHR11375	Panther	PHOSPHATASE INHIBITOR-RELATED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_B6UH95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acidic leucine-rich nuclear phosphoprotein 32 family member A n=1 Tax=Zea mays RepID=B6UH95_MAIZE	SoyBase	E_val: 4.00E-37	ISS
UniRef100_I1JCR1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCR1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g06440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g06440

Paralog	Evidence	Comments
Glyma16g25500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g06440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g057800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g06440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g06440

Limit To All Plant Sequences

>Glyma02g06440.1   sequence type=CDS   gene model=Glyma02g06440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACATAGGATATCGTATTTGATGGACGAGATCTGGGAGAGGGCTGTGGAAACGGCGTTGGACGGCGAGAAAGACCACGCGGCCGCGCGGACGCTAACCCTAGACGGCGCCGTTAAGTGCGTCCAGGGGCGGTTACCCCCGCCTAGCCTTCTGGAGCGGTTCCAGAACCTGCAGCACCTCTCAATAGCAAACGTCGGCGTTTCGTCGCTGGAGCAGTTTCCCCGGCTGAGGAACCTGCAGAAGCTGAACCTCTCCGACAACCGGATCGCCTCCGGGCTCGAATTTCTCGTGCAGGCCGGGCTCGATTCGCTTCGCGACCTCGATTTGTCGAACAATCGGATTCAGTACATTGAGGATCTCGCGCCGCTCGCGCAGTTGAAGCTGGTGTCGCTGGATCTGTACGAGTGCCCCGTGACGCGCGTGAAGGACTATCGATCTAGGGTTTTCGGGTTGATCAAGTCGTTGAAGTACTTGGACAAGATGGACGCGGAGGAGAACGAGAGGCCCGAGAGTGACGACGAGGAGGAGGATGAGGAGGAGGAGGAGGAAGAGGATGACCCTGGGAGCGGCGAGATTGACGGCGGTGAGGAGGATCGGCCCTTTGGGATTAACAATGGGCACAGTGAGGGTGCTGATGGCGTTGTCGATGCTGATGATGAGGAGGAGAGTGACGCGGATGAGGAGGAGACGGAGTCGTCGAGGCGGATGGTTGTTAATGGAGAGGGCCATCGGGAGAATGGTCTTGGGGTTGCGCCAGTGGAGGGGGACGATGTTGAGGAGGAAGATGATGAGGATGATTCTGGTGAGGAGATTGATGAGGAGGAGGGGGATGATGATGATGTGGTGGAGGTTCATGAGATTGAGGATAGTGATGATGAGGATGGAGTGGAGGAGTATGATGAGGACGATGATGATGAGGACGACGATGAGGAAGAAGAGGTGGATAACGACGAGGGTGATTTTGTGGAGCCTGAGAGAACCGGGAGGTTGACGAGTACTGAGGGTGAGATTGATGGGCATGAGCAGGGGGAAGAGGATGGGGATGAGGATGATAATGGGGAGACTGGGGAGGATGAGATTGGGGTTGAAGATGATGGAGACTTTGAAGATGACGATGAAGAAGAAGACTATGGTGCTGGGTATCTTGTTCAGCCAGTTGGACAGTCTGATGCTGTCAATGCTGCAGTTGCTGATGTAGATGGTGGAAATGATGATGGTGAAGAGAAGGATGAAGTTGATGACGACGATGAGGATGATGTTCAGGTGTTGCCTCCTCCTGAATCTTCCCACCTTAAGAGGAAGAGGGATGATGATGAAGAGGACGAGGACAGTGACAATGATGATGATGAAGATGTGGTAGCATTCACGAAGTCACCCAAGAAGCATCATTGA

Predicted protein sequences of Glyma02g06440

Limit To All Plant Sequences

>Glyma02g06440.1   sequence type=predicted peptide   gene model=Glyma02g06440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRHRISYLMDEIWERAVETALDGEKDHAAARTLTLDGAVKCVQGRLPPPSLLERFQNLQHLSIANVGVSSLEQFPRLRNLQKLNLSDNRIASGLEFLVQAGLDSLRDLDLSNNRIQYIEDLAPLAQLKLVSLDLYECPVTRVKDYRSRVFGLIKSLKYLDKMDAEENERPESDDEEEDEEEEEEEDDPGSGEIDGGEEDRPFGINNGHSEGADGVVDADDEEESDADEEETESSRRMVVNGEGHRENGLGVAPVEGDDVEEEDDEDDSGEEIDEEEGDDDDVVEVHEIEDSDDEDGVEEYDEDDDDEDDDEEEEVDNDEGDFVEPERTGRLTSTEGEIDGHEQGEEDGDEDDNGETGEDEIGVEDDGDFEDDDEEEDYGAGYLVQPVGQSDAVNAAVADVDGGNDDGEEKDEVDDDDEDDVQVLPPPESSHLKRKRDDDEEDEDSDNDDDEDVVAFTKSPKKHH*

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