|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G50670 | AT | Annotation by Michelle Graham. TAIR10: U1 small nuclear ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE LENGTH=427 | SoyBase | E_val: 4.00E-74 | ISS |
GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0030422 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference | SoyBase | N/A | ISS |
GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
PTHR13952 | Panther | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD | JGI | ISS | |
PTHR13952:SF3 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
UniRef100_G7LEU2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: U1 small nuclear ribonucleoprotein 70 kDa n=2 Tax=Medicago truncatula RepID=G7LEU2_MEDTR | SoyBase | E_val: 3.00E-91 | ISS |
UniRef100_I1JCQ9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCQ9_SOYBN | SoyBase | E_val: 0 | ISS |
Glyma02g06420 not represented in the dataset |
Glyma02g06420 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g06420.1 sequence type=CDS gene model=Glyma02g06420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGAAGACTTCAACAATAACGATCCTCTCATCCGCAACCAAAACGCCGCCGTTCAGGCTCGCGCCAAGGACCAGAACCGCGCCAACGCCCTTCAGCTCAAGCTGATTGGACAGAGTCACCCTACTGGTCTCACAGCGAATTTCCTCCTCCGGAGAAAAGAAATGCCCATCGCTAATAGTTTTCAGTTTGCACAAAAAAGAGCAAGAATACACAAGTTAAGACTAGAGAAGGGAGCTGCAAAGGCTGCTGAGGAGCTTGAGAAATATGATCCACACAATGACCCAAATGTATCAGGAGATCCATACAAGACATTGTTTATAGCCAGACTTAGTTATGAGAGCACTGATAGCAGAATGAAAAGGGAGTTTGAGTCATATGGTGCAATCAAACGGGTCTTGGGGCATGGGGTAGCAATTGTTTTAGCTGCAAGTTTAGCATCTCAGTACACATCCCTGGTGATGATTGGTAATCTTCTGGAAATGGTAAATGTTTCTCAAAATTTCAATCAAACCCAATTCCCGTTCGATTGGTTACTTACACTGACAAATAAACCCAAGGGTTATGCATTCATCGAGTATTTTCACACAAGAGACGAGAAAGCTGACGGTAGGAAAATTGAGGGTCAGAGGGGTGGTGGGCTGGGTACTACAAGAGTAGGGGGTGAAGAAGTTAATCAGCAACATTTTGGGAGGGAGCAACAGCAGTCAGGTCTTTCTCGTTCTGAAGAACCTAGAGCACAAGAGGATCATCATGGTGATCGGGACAGAGAAAAGTCAAGGGAAAGAGGTAAGGACAGACACAGAGAAAGTGAGTGGTCATGTGAGCGATCTAGTGGTAGGGCCAGGGATCGTGATTATAGAGGGGATAGGCACTACAGAGATTGGGATAGGAATATGGACAGAGACAGGGAACGAGAGAGAGATCGGGACGTGATCGTGGTCGAGAGCGTGATTAGGATAGGGATCATGACCAGGACCGCGAACATGACCGTTATCGTGAAAGAGATAGGGATTATGAAATTGGGAGAGACTGATTGTGATCACGTTGAATCTAAACATGATAAGGAACATCATGGTGAAAGAGAGCATGACTATGAACCTGAGGATGGTCGTGGTTGGTACAACCAACCTGGGTATGGGCATAGCCATGCAGATCCCAACCATGATCCTGATCACTAG
>Glyma02g06420.1 sequence type=predicted peptide gene model=Glyma02g06420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEDFNNNDPLIRNQNAAVQARAKDQNRANALQLKLIGQSHPTGLTANFLLRRKEMPIANSFQFAQKRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFIARLSYESTDSRMKREFESYGAIKRVLGHGVAIVLAASLASQYTSLVMIGNLLEMVNVSQNFNQTQFPFDWLLTLTNKPKGYAFIEYFHTRDEKADGRKIEGQRGGGLGTTRVGGEEVNQQHFGREQQQSGLSRSEEPRAQEDHHGDRDREKSRERGKDRHRESEWSCERSSGRARDRDYRGDRHYRDWDRNMDRDRERERDRDVIVVESVIRIGIMTRTANMTVIVKEIGIMKLGETDCDHVESKHDKEHHGEREHDYEPEDGRGWYNQPGYGHSHADPNHDPDH*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||