SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66760 | AT | Annotation by Michelle Graham. TAIR10: succinate dehydrogenase 1-1 | chr5:26653776-26657224 FORWARD LENGTH=634 | SoyBase | E_val: 0 | ISS |
| GO:0006099 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle | SoyBase | N/A | ISS |
| GO:0006121 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrial electron transport, succinate to ubiquinone | SoyBase | N/A | ISS |
| GO:0022900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: electron transport chain | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005749 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex II | SoyBase | N/A | ISS |
| GO:0000104 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: succinate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| GO:0050897 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding | SoyBase | N/A | ISS |
| KOG2403 | KOG | Succinate dehydrogenase, flavoprotein subunit | JGI | ISS | |
| PTHR11632 | Panther | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT | JGI | ISS | |
| PTHR11632:SF5 | Panther | FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT | JGI | ISS | |
| PF00890 | PFAM | FAD binding domain | JGI | ISS | |
| PF02910 | PFAM | domain | JGI | ISS | |
| UniRef100_G7KDJ3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Succinate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7KDJ3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JCQ7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCQ7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g06400 not represented in the dataset |
Glyma02g06400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g057400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g06400.1 sequence type=CDS gene model=Glyma02g06400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGCGGTGCGTGGCTCGTGCTATTCGCGTACCAGCTTCGGAGAGATCCATACCTAATCACCAACCACTTAGATCTCACATTTCAAGATTTTTCTCTGGTGGTGGTGGTGGTGGGAGCTCCTCGTACAACGTGGTGGATCACAAGTACGATGCGGTCGTTGTGGGCGCTGGCGGCGCAGGGTTGAGAGCCGCCATTGGACTTTCGGAGCATGGCTTCAACACTGCTTGCATTACAAAGCTGTTCCCAACTCGTTCACACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCATTGGGAAATATGACTGAAGATGATTGGAGGTGGCACATGTATGACACTGTTAAGGGAAGTGATTGGCTTGGGGACCAAGATGCCATCCAATATATGTGTAGGGAGGCACCAAAAGCAGTCATTGAGCTTGAGAATTATGGATTGCCATTTTCACGAACTGAAGATGGAAGAATATACCAGCGTGCATTTGGTGGTCAGAGCTTGAACTTCGGAAAAGGTGGTCAGGCATATCGTTGTGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGCCAAGCTATGAGGCATAATACCCAGTTTTTTGTGGAATATTTTGCATTAGATCTATTAATGAACAGTGATGGTACTTGCCAAGGAGTGATTGCCTTGAATATGGAGGACGGAACATTACATCATTTCCAAGCTTCTTCAACAATTTTGGCCACAGGGGGCTATGGCAGAGCATACTTTTCTGCAACTTCAGCACATACATGCACTGGAGATGGCAATGCCATGGTTGCACGTGCTGGGATACCACTTGAGGATTTAGAGTTTGTACAATTTCACCCAACTGGCATATATGGAGCTGGCTGCCTTATCACAGAAGGTTCTCGTGGTGAAGGTGGAATTCTTAGGAATAGTGAAGGTGAGAGATTTATGGAACGATACGCACCTACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCTAGGTCAATGACTATGGAAATCCGGGAAGGCCGTGGTGTAGGACCCCTGAAAGATCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTTCTTAAGGAGAGGCTACCTGGTATCTCTGAAACAGCTGCTATTTTTGCTGGTGTGGATGTTACTAAGGAACCTATTCCTGTTTTGCCAACAGTGCATTATAACATGGGTGGTATTCCCACAAATCATCATGGAGAGGTGATTACTATTAAAGGTGATGATCCCGATGCAGTAGTTCCTGGATTAATGGCTGCCGGGGAAACAGCCTGTGCTTCAGTCCATGGTGCAAATAGGCTTGGTGCAAATTCACTTCTTGACATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTTCAGAAATCCAAAGGCCAGGAGAGAAACAAAAGCCTTTAGAGAAGGATGCTGGTATGAAAACAATTGCTTGGCTGGACAAATTGAGAAATTCAAACGGGTCGTTGCCAACTTCAAAAATTCGGTTAAATATGCAACGAATAATGCAAAACAATGCTGCTGTGTTCCGTACACAAGAAACGTTAGAAGAAGGTTGTCAATTAATTGATAAAGCATGGGAGAGCTTTCATGATGTCAAGTTGAAGGATCGAAGTTTGATATGGAACTCTGACTTGATTGAGACCATTGAGTTGGAAAATCTTCTGATAAATGCCTGCATCACCATGCACTCTGCTGAAGCAAGAAAAGAGAGTAGAGGTGCTCATGCCCGTGAGGACTTCACAAAAAGAGATGATGAGAAATGGATGAAACATACTTTGGGATATTGGGATAATGAGAAGGTGCGGTTAGATTACAGGCCGGTGCACATGAATACGTTGGATGATGAGGTGGAATCATTCCCTCCTAAAGCTCGTGTTTATTAG
>Glyma02g06400.1 sequence type=predicted peptide gene model=Glyma02g06400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWRCVARAIRVPASERSIPNHQPLRSHISRFFSGGGGGGSSSYNVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGTCQGVIALNMEDGTLHHFQASSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVITIKGDDPDAVVPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVSEIQRPGEKQKPLEKDAGMKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLKDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEKWMKHTLGYWDNEKVRLDYRPVHMNTLDDEVESFPPKARVY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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