Report for Sequence Feature Glyma02g06390
Feature Type: gene_model
Chromosome: Gm02
Start: 5074932
stop: 5077443
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g06390
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G48880 AT
Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein | chr3:18127873-18129008 FORWARD LENGTH=309
SoyBase E_val: 3.00E-39 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR23125 Panther
F-BOX/LEUCINE RICH REPEAT PROTEIN
JGI ISS
PTHR23125:SF101 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00646 PFAM
F-box domain
JGI ISS
UniRef100_G7KZ79 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box/LRR-repeat protein n=1 Tax=Medicago truncatula RepID=G7KZ79_MEDTR
SoyBase E_val: 2.00E-70 ISS
UniRef100_I1JCQ6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCQ6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g06390
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g06390
Paralog Evidence Comments
Glyma16g25470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g06390 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g057300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g06390
Coding sequences of Glyma02g06390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g06390.1 sequence type=CDS gene model=Glyma02g06390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATAATAGCAATTCAGCTGCAACGACCGGTGTCTGGAATGATTTTCGGTCAATTGATATAATAATAACAATACTTATGAGCCTCAATGTTGTGGACCTTGCAGTTGCCTCGCTGGTCTGCAAAATGTGGAACAAAGCTTGTCGTGACCCGTCTCTTTGGCGCAAAATTGATCTGTCCGAACTCAATAACTCATACCTTTTCAACATACAAAATAATAAGCCGGGAGCTTACAAGCATTCGAGGGGGAAAATTACTCAATTCTTAAAGTATGTTTTGAGTCTGAGTAATGGAAATACAAATTGCTTAATATTTAACTACAATGTTGACTTAACGGATGAGCAGTTCATCATAGCTGCTGAAAGGACCCCAAATCTGAAACGACTAGTTCTACCAAATACATGTGTCTTTTCAAGAAAAGCAGTGCATACGGCAATGAAGTCATGGGGGGGCCTAGAGTCCATTACCATTTCCTTCGATGACCCCAATAAATACATATTTTCTGCAATTGCCGAATACTGCAAGAACATAACAGAGATGAAATTTAGTCACGGTTGCCTCCTCTTTGAAGAAAATTATGTTGAAGCGCTGCTTAAATGTGCCCCTAACTTGAAGGCTTTGAGCATTCGGTGCATAATGACAAGCATGGGTGCTTTGTGCGGTGTGTTCACTTCCTTCCAACATTTGGAGGCGGTGAATATATGCCATAGCTCCATTATAGATGCACCATATTCTGATTTCGGTGTTGTGGATATTACTTATGTACAAAAGCATTTGCCGCCATCGAATTACGGAAAGCTTATATATTGTAAAGAAGGATCATGCCTTAGGTGCAAGAATGACAGGAGCATTATTCCTGCCGGAATTTTCCAAATTACAAGCTTTCTTATCCATGCCTCAGAGGATTTGTGGCGGGAGGACGAGATAACTTCTCTTGCACATTAA
Predicted protein sequences of Glyma02g06390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g06390.1 sequence type=predicted peptide gene model=Glyma02g06390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDNSNSAATTGVWNDFRSIDIIITILMSLNVVDLAVASLVCKMWNKACRDPSLWRKIDLSELNNSYLFNIQNNKPGAYKHSRGKITQFLKYVLSLSNGNTNCLIFNYNVDLTDEQFIIAAERTPNLKRLVLPNTCVFSRKAVHTAMKSWGGLESITISFDDPNKYIFSAIAEYCKNITEMKFSHGCLLFEENYVEALLKCAPNLKALSIRCIMTSMGALCGVFTSFQHLEAVNICHSSIIDAPYSDFGVVDITYVQKHLPPSNYGKLIYCKEGSCLRCKNDRSIIPAGIFQITSFLIHASEDLWREDEITSLAH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
