Glyma02g06311 - SoyBase

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Report for Sequence Feature Glyma02g06311

Feature Type:	gene_model
Chromosome:	Gm02
Start:	5024809
stop:	5025707
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g06311

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
ATCG00050	AT	Annotation by Michelle Graham. TAIR10: ribosomal protein S16 \| chrC:5084-6188 REVERSE LENGTH=79	SoyBase	E_val: 3.00E-14	ISS
GO:0006091	GO-bp	Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy	SoyBase	N/A	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0051607	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to virus	SoyBase	N/A	ISS
GO:0000312	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid small ribosomal subunit	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR12919	Panther	30S RIBOSOMAL PROTEIN S16	JGI		ISS
PTHR12919:SF3	Panther	CHLOROPLAST 30S RIBOSOMAL PROTEIN S16	JGI		ISS
UniRef100_Q2PMS5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 30S ribosomal protein S16, chloroplastic n=25 Tax=core eudicotyledons RepID=RR16_SOYBN	SoyBase	E_val: 1.00E-17	ISS
UniRef100_Q2PMS5	UniRef	Annotation by Michelle Graham. Best UniRef hit: 30S ribosomal protein S16, chloroplastic n=25 Tax=core eudicotyledons RepID=RR16_SOYBN	SoyBase	E_val: 1.00E-17	ISS

Expression Patterns of Glyma02g06311

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g06311 not represented in the dataset	Glyma02g06311 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g06311 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g056500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g06311

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g06311

Limit To All Plant Sequences

>Glyma02g06311.1   sequence type=CDS   gene model=Glyma02g06311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACCACACACTGCGCTTGAAACACCTCCGAAGAAGACAAGATCAGGAACGTAGACGGCGTATTTTTTTGTTAAGGCACCAACTTTGTATTGCCATGCACCAGAACCACCGCGGGCTTGTTGGGGCTCGTGGTGATTCTGGGCTTCTCGTACTTTTTCTTCGGCTTCGTTATGGTGTCGGAGGGTACCCAGAAACTCATCACGGTGTAGGGCTTCACCCCAGCTGCCATCTTCATGAGGCAATCCGTTTATCCAATCTTGCAATTGATGTTCGATCTCAAAGAAAGGGAAGAGATTTTCGGAAAGTAAGTTTTTATGATCCAATAAAGAATCAAACATATTTAAATATTTTTGTTATTCTATATTTTCTTGAACGAGACGCTCAACCTAAAGAAACTGTTTAG

Predicted protein sequences of Glyma02g06311

Limit To All Plant Sequences

>Glyma02g06311.1   sequence type=predicted peptide   gene model=Glyma02g06311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYHTLRLKHLRRRQDQERRRRIFLLRHQLCIAMHQNHRGLVGARGDSGLLVLFLRLRYGVGGYPETHHGVGLHPSCHLHEAIRLSNLAIDVRSQRKGRDFRKVSFYDPIKNQTYLNIFVILYFLERDAQPKETV*

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