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Report for Sequence Feature Glyma02g06190
Feature Type: gene_model
Chromosome: Gm02
Start: 4941458
stop: 4944415
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g06190
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G18290 AT
Annotation by Michelle Graham. TAIR10: anaphase promoting complex 10 | chr2:7948522-7950096 REVERSE LENGTH=192
SoyBase E_val: 3.00E-119 ISS
GO:0007276 GO-bp
Annotation by Michelle Graham. GO Biological Process: gamete generation
SoyBase N/A ISS
GO:0008283 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell proliferation
SoyBase N/A ISS
GO:0010087 GO-bp
Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis
SoyBase N/A ISS
GO:0030071 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of mitotic metaphase/anaphase transition
SoyBase N/A ISS
GO:0031145 GO-bp
Annotation by Michelle Graham. GO Biological Process: anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
SoyBase N/A ISS
GO:0032875 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of DNA endoreduplication
SoyBase N/A ISS
GO:0032876 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of DNA endoreduplication
SoyBase N/A ISS
GO:0042023 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication
SoyBase N/A ISS
GO:0043161 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process
SoyBase N/A ISS
GO:0043248 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasome assembly
SoyBase N/A ISS
GO:0051302 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of cell division
SoyBase N/A ISS
GO:0051510 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth
SoyBase N/A ISS
GO:0051788 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to misfolded protein
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005680 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: anaphase-promoting complex
SoyBase N/A ISS
GO:0016604 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nuclear body
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG3437
KOG
Anaphase-promoting complex (APC), subunit 10
JGI ISS
PTHR12936 Panther
ANAPHASE-PROMOTING COMPLEX 10
JGI ISS
PF03256 PFAM
Anaphase-promoting complex, subunit 10 (APC10)
JGI ISS
UniRef100_B9S6F0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Anaphase-promoting complex, putative n=1 Tax=Ricinus communis RepID=B9S6F0_RICCO
SoyBase E_val: 5.00E-119 ISS
UniRef100_C6T5Z0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T5Z0_SOYBN
SoyBase E_val: 9.00E-140 ISS
Expression Patterns of Glyma02g06190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g06190
Paralog Evidence Comments
Glyma16g25220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g06190 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g055400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g06190
Transcripts of Glyma02g06190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g06190.2 sequence type=transcript gene model=Glyma02g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATATTTGTGTTTGCAAAAATTTCTGTCCCCATATCCATATTTATGAGAGTAAAAGAGTGAGCTTGAATGCTTGATATCTGTTATGAACTGCTGGGTTTGGGCTCGTGTAAGCTTAAGGGCTCTACTATTGGTACTTAAAAAAAGAAAACTCCCATCTTTTTACAAAAAGTAGTCAAAACTTGAAATCAAATCAGGAGCGGGGGAAAAAGAAAAGAGAGAGAAGTAGGGTTCGAAAATGGCAGCAGAATCATCAGAGGGCGAAGAAGAAACCAAGTTAAGCGGAGGGAGCTTATTGCTGACCGTTGACGACGACTTAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTATCTGGAGTTGATCCTAGGGATACCTTTGTGAACACTTTCATGTTGCAAATTGCTGTGTTGTCAAACCATCTCAATGGAAGGGATACTCACGTGCGGCAGATCAAAGTTTACGGGCCTCGACCGAACCCTATCCCACATCAGCCATTCCAATTTACTTCAAGGGAGTTTATCACCTACTCTTCTATAAGATGAGAGTTTATGGAAGGAATTGATGAAGCCACCTAGTGTTAAATCAAAGGATGCTGCCCACTAAGTGATTATATCATCTGGAAGGTCTGAAACCAAATCACTGCAGACCGAAATGTCAAAAATACATTTCACTTCAATATTCTTCTTGAAAATTGTCATCAGTAAATGTGACCATCAGTGATTCAGTACCCTTTGTGTCTGGCTAGTATTTATAATTTGTTTAGATTCAGGGTCTGACTTCCTTGAAGAGTTCTATAATTATTAATTAACAAAATGATATGTGCATTGTGTGAATTTCTATTTCCTCTTTCTTATCATCATAGTTTCTATGAAATTGGCACTAACGCCATGGTATTGGTTTATCTAGTTCTACTGCTGAAGAATATAATCTACAGACGTGTTTTTCTTTTTCATTCAAGGATTCTGGTGTGGTTAATTAGTTGGTTAGTTAAAAGATCTCATTTAACCAAATGAATATTTC
>Glyma02g06190.3 sequence type=transcript gene model=Glyma02g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATATTTGTGTTTGCAAAAATTTCTGTCCCCATATCCATATTTATGAGAGTAAAAGAGTGAGCTTGAATGCTTGATATCTGTTATGAACTGCTGGGTTTGGGCTCGTGTAAGCTTAAGGGCTCTACTATTGGTACTTAAAAAAAGAAAACTCCCATCTTTTTACAAAAAGTAGTCAAAACTTGAAATCAAATCAGGAGCGGGGGAAAAAGAAAAGAGAGAGAAGTAGGGTTCGAAAATGGCAGCAGAATCATCAGAGGGCGAAGAAGAAACCAAGTTAAGCGGAGGGAGCTTATTGCTGACCGTTGACGACGACTTAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTATCTGGAGTTGATCCTAGGGATACCTTTGTGAACACTTTCATGTTGCAAATTGCTGTGTTGTCAAACCATCTCAATGGAAGGGATACTCACGTGCGGCAGATCAAAGTTTACGGGCCTCGACCGAACCCTATCCCACATCAGCCATTCCAATTTACTTCAAGGGAGTTTATCACCTACTCTTCTATAAGATGAGAGTTTATGGAAGGAATTGATGAAGCCACCTAGTGTTAAATCAAAGGATGCTGCCCACTAAGTGATTATATCATCTGGAAGGTCTGAAACCAAATCACTGCAGACCGAAATGTCAAAAATACATTTCACTTCAATATTCTTCTTGAAAATTGTCATCAGTAAATGTGACCATCAGTGATTCAGTACCCTTTGTGTCTGGCTAGTATTTATAATTTGTTTAGATTCAGGGTCTGACTTCCTTGAAGAGTTCTATAATTATTAATTAACAAAATGATATGTGCATTGTGTGAATTTCTATTTCCTCTTTCTTATCATCATAGTTTCTATGAAATTGGCACTAACGCCATGGTATTGGTTTATCTAGTTCTACTGCTGAAGAATATAATCTACAGACGTGTTTTTCTTTTTCATTCAAGGATTCTGGTGTGGTTAATTAGTTGGTTAGTTAAAAGATCTCATTTAACCAAATGAATATTTC
Coding sequences of Glyma02g06190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g06190.1 sequence type=CDS gene model=Glyma02g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGCAGAATCATCAGAGGGCGAAGAAGAAACCAAGTTAAGCGGAGGGAGCTTATTGCTGACCGTTGACGACGACTTAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTATCTGGAGTTGATCCTAGGGATACCTTTGTGAACACTTTCATGTTGCAAATTGCTGTGTTGTCAAACCATCTCAATGGAAGGGATACTCACGTGCGGCAGATCAAAGTTTACGGGCCTCGACCGAACCCTATCCCACATCAGCCATTCCAATTTACTTCAAGGGAGTTTATCACCTACTCTTCTATAAGATGA
>Glyma02g06190.2 sequence type=CDS gene model=Glyma02g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGCAGAATCATCAGAGGGCGAAGAAGAAACCAAGTTAAGCGGAGGGAGCTTATTGCTGACCGTTGACGACGACTTAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTATCTGGAGTTGATCCTAGGGATACCTTTGTGAACACTTTCATGTTGCAAATTGCTGTGTTGTCAAACCATCTCAATGGAAGGGATACTCACGTGCGGCAGATCAAAGTTTACGGGCCTCGACCGAACCCTATCCCACATCAGCCATTCCAATTTACTTCAAGGGAGTTTATCACCTACTCTTCTATAAGATGA
>Glyma02g06190.3 sequence type=CDS gene model=Glyma02g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGCAGAATCATCAGAGGGCGAAGAAGAAACCAAGTTAAGCGGAGGGAGCTTATTGCTGACCGTTGACGACGACTTAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTATCTGGAGTTGATCCTAGGGATACCTTTGTGAACACTTTCATGTTGCAAATTGCTGTGTTGTCAAACCATCTCAATGGAAGGGATACTCACGTGCGGCAGATCAAAGTTTACGGGCCTCGACCGAACCCTATCCCACATCAGCCATTCCAATTTACTTCAAGGGAGTTTATCACCTACTCTTCTATAAGATGA
Predicted protein sequences of Glyma02g06190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g06190.1 sequence type=predicted peptide gene model=Glyma02g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAESSEGEEETKLSGGSLLLTVDDDLTEMGKKAAWSVSSCKPGNGVSSLRDDNLETYWQSDGGQPHLVNIQFQKKVRLQLIVLYVDFKLDESYTPSKVSIRAGDGFHNLKEIKTVELVKPTGWVYLSLSGVDPRDTFVNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPFQFTSREFITYSSIR*
>Glyma02g06190.2 sequence type=predicted peptide gene model=Glyma02g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAESSEGEEETKLSGGSLLLTVDDDLTEMGKKAAWSVSSCKPGNGVSSLRDDNLETYWQSDGGQPHLVNIQFQKKVRLQLIVLYVDFKLDESYTPSKVSIRAGDGFHNLKTVELVKPTGWVYLSLSGVDPRDTFVNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPFQFTSREFITYSSIR*
>Glyma02g06190.3 sequence type=predicted peptide gene model=Glyma02g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAESSEGEEETKLSGGSLLLTVDDDLTEMGKKAAWSVSSCKPGNGVSSLRDDNLETYWQSDGGQPHLVNIQFQKKVRLQLIVLYVDFKLDESYTPSKVSIRAGDGFHNLKEIKTVELVKPTGWVYLSLSGVDPRDTFVNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPFQFTSREFITYSSIR*