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Report for Sequence Feature Glyma02g06070

Feature Type:gene_model
Chromosome:Gm02
Start:4855157
stop:4857840
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g06070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19640AT Annotation by Michelle Graham. TAIR10: jasmonic acid carboxyl methyltransferase | chr1:6789166-6791708 REVERSE LENGTH=389 SoyBaseE_val: 5.00E-103ISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009694GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0008168GO-mf Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity SoyBaseN/AISS
GO:0030795GO-mf Annotation by Michelle Graham. GO Molecular Function: jasmonate O-methyltransferase activity SoyBaseN/AISS
PF03492PFAM SAM dependent carboxyl methyltransferase JGI ISS
UniRef100_B5A7G5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Salicylic acid methyl transferase-like protein n=1 Tax=Glycine max RepID=B5A7G5_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1JCM8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCM8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g06070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g06070
ParalogEvidenceComments
Glyma16g24800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g06070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g054200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g06070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g06070
>Glyma02g06070.1   sequence type=CDS   gene model=Glyma02g06070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTAGCACAGGTACTCCACATGAACGGTGGCGTTGGAGACGCAAGCTATGCAAACAACTCCCTTGTTCAGCAAAAGGTGATTTGTTTGACAAAGCCCATAAGAGAGGAAGCCATAAGAAGCCTCTATTGCAGCACACACCCCAGAAGCTTGGCAATTGCAGATTTGGGTTGCTCTTCTGGACCAAACACTTTATTTGTTGTGTCTGAATTCATAAAAATTGTGGAGAAGCTTTGCCGAGAGCTGAACCACAAATCTCCAGAATACAAAGTCTTTCTGAATGATCTCCCTGGGAATGACTTCAACAACATCTTCAAGTCTCTTGACAGCTTCAAAGAGAAATTGTGTGATGAAATGGAAAGTGGGATCGGTCCATGCTACTTCTCGGGTGTTCCCGGTTCTTTCTATGGAAGGGTTTTCCCATATCAAAGTCTTCATTTTGTCCATTCCTCATACAGCCTTCAATGGCTATCTAAGGTTCCTGAGGGTGTAGACAACAACAAGGGCAATGTTTACATAGGCAGTACGAGCCCCAAAAATGTTGTGAGAGCTTACTATGAGCAATTTCAGAGAGATTTCTCTCTTTTTCTCAAGTGTCGTGCAGAGGAATTGGTTGAAGGAGGACGCATGGTTCTCACATTTTTGGGAAGAAGAAGCGATGATCCATCTAGCAAGGATGGTTGCTACATTTGGGAGCTTTTGGCTACTGCTCTTAGTGATATGGTCTTGCAGGGAATCATAAGAGAAGAGCAATTAGATACTTTTAACATCCCTCAATACACTCCATCCCCATCTGAAGTGAAATTGGAAGTTCTTAAAGAAGGATCATTCGCCATCAATCGTCTAGAGGTTTCTGAGGTGAATTGGAATGCTCTCGATGAGTGGAATGCTCTAGACTTTGAATCTGAAAGGTCTGAATCACTTAGTGATGGTGGATACAATGTGGCACAGTGCATGAGGGCTGTGGCAGAACCTATGCTGATTAGCCACTTTGGTGAAGCTATCATTGAAGAGGTTTTTTGCCGCTACCAGCAAATCTTGGCTGAACGTATGTCCAAGGAGAAAACCAAGTTCATCAATGTTACCATATTATTGACTAGAAAAGCATAA
Predicted protein sequences of Glyma02g06070
>Glyma02g06070.1   sequence type=predicted peptide   gene model=Glyma02g06070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVAQVLHMNGGVGDASYANNSLVQQKVICLTKPIREEAIRSLYCSTHPRSLAIADLGCSSGPNTLFVVSEFIKIVEKLCRELNHKSPEYKVFLNDLPGNDFNNIFKSLDSFKEKLCDEMESGIGPCYFSGVPGSFYGRVFPYQSLHFVHSSYSLQWLSKVPEGVDNNKGNVYIGSTSPKNVVRAYYEQFQRDFSLFLKCRAEELVEGGRMVLTFLGRRSDDPSSKDGCYIWELLATALSDMVLQGIIREEQLDTFNIPQYTPSPSEVKLEVLKEGSFAINRLEVSEVNWNALDEWNALDFESERSESLSDGGYNVAQCMRAVAEPMLISHFGEAIIEEVFCRYQQILAERMSKEKTKFINVTILLTRKA*






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