SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66420 | AT | Annotation by Michelle Graham. TAIR10: LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 1232 Blast hits to 1230 proteins in 311 species: Archae - 18; Bacteria - 959; Metazoa - 1; Fungi - 84; Plants - 42; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). | chr5:26521893-26524986 REVERSE LENGTH=754 | SoyBase | E_val: 0 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PF06792 | PFAM | Uncharacterised protein family (UPF0261) | JGI | ISS | |
| PF09370 | PFAM | TIM-barrel signal transduction protein | JGI | ISS | |
| UniRef100_G7LDW4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tm-1^GCR26 protein n=1 Tax=Medicago truncatula RepID=G7LDW4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JCM5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCM5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g06040 not represented in the dataset |
Glyma02g06040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g24730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g053800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g06040.1 sequence type=CDS gene model=Glyma02g06040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCACCACCACAACAACTCCACAACTCTTCGCGTTTTCTGCGTCGGAACCCTCGACACCAAGCTCCACGAGCTCCTATTCCTCTCCGAATCACTTCGCTCCAATCTCAATCGCTTCTCCTCCTCTAAGGTAGAAGTGGTGGTGGTTGATGTCTCTGCCGGTACAAACGCGCCAGAGAGTTTGCAGGATTTGGCGTTTGTTTCAAGGAATGATGTTGTGTCTTCCTACAACAGTGGATCAGGCGAGGCCTTGTCTCTCCCGGAGGACAGAGGCAAGGCTGTTGCCGTGATGACTCAAGCATTGGAGCAGTTCCTGAAGAAGTCTCACGAGGATCAGAGTCTTGTTGGCGTTATTGGTGTTGGGGGGAGTGGAGGGACGTCCCTCTTGTCGTCTCCCTTCGCCTCTCTCCCAATTGGGATCCCCAAGGTCATCGTGTCAACGGTGGCCAGCGGTCAAACTGAGCCTTATGTTGGAACCTCGGATTTGGTGTTGTTTCCGTCTGTCGTGGACGTTGCTGGCATCAATAGAGTTAGCAGGCTCATCCTGTCCAATGCTGCAGCTGCTTTTGCTGGGATGGTTGTTGGAAGGGTTCAGAGCTTACAGGAATCTTCTCGCGCCGAAGATAAGCCTACCGTTGGGATAACTATGTTTGGAGTTACTACTCCTTGTGTTAATGCTGTCAGAGATAGGTTGCATGAAGAAGGTTATGAAACCCTGGTTTTCCATGCAACTGGGGTTGGTGGCAGGGCGATGGAGAATTTGGTTAGAGAGGGATTTATACAGGGTGTTTTTGACATCACAACAACAGAGGTAGCAGACTACATAGTTGGAGGTGTAATGGCTTGTGAAAGTTCTCGTTTTGATGCCATCATAGAGAGTAAAGTCCCGTTAGTCTTGAGTGTGGGAGCATTAGACATGGTTTCACTTATGCGAACAACGGTAGATGAGAACAGAAAATTTGCTGATTTCATAGCAAATAAACTGAAGAATTCATCATCTAAGATTTGTGTTTGCCTTCCAGAAAAAGGTGTATCTGCTTTAGATGCACCTGGGAAGCCATTTTATGATCCAGAGGCAACGAGTACTCTTCTTCGTGAATTACAAAACCTTATTCCGACTAATGATGATCGACAGGTAAAGGTGTATCCTCATCATATTAATGATCTTGAATTTTCAAATGCATTGGTTGATGCATTTTTAGAGATTAATGAGAAAACTAGTAAAGGTTCTACTCATCAACAAGTAGCCAGTCCTGAATCTGTTGAACAATTTCATGAGGATAATGTTTCAAATGCATCAAGCTTTGGGACCATTCTCTATACACCTAATGAATTCCCAGAAGCAAGAACAGAAACTTTGGAGAAAACACAGCTTATATTACAGCAACTTTTACATCAGATACATAAAGGAATTCCTATAATAGGAGCTGGTGCTGGGACAGGTATATCTGCCAAGTTTGAAGAAGCTGGAGGGGTTGATCTAATAGTATTGTACAATTCAGGGCGCTTCCGAATGGCTGGAAGAGGTTCATTAGCTGGATTATTACCTTTTGCTGATGCTAATGCTGTTGTTCTCGACATGGCCAATGAAGTTTTGCCAGTGGTAAAGAAGGTTCCAGTTCTTGCTGGTGTATGTGCAACTGATCCCTTCCGTCGAATGGATTACTTCCTTAAACAGGTGGAGTCTACTGGATTCTCAGGGGTACAAAATTTTCCTACTGTTGGGTTATTTGATGGTAATTTTAGACAAAATCTTGAAGAAACGGGAATGGGATATAGCTTGGAAGTTGAGATGATCCAGAAAGCCCATAAAATGGGTCTCTTGACAACCCCATATGCTTTCAATCAATATGAAGCTATTGAAATGGCTAAAGTTGGCGCTGATATTATAGTGGCCCATATGGGTCTAACTACAACAGGCTCCATAGGTGCAAAAACAGCTGTTTCACTTGAAGAAAGTGTAGTTCGTGTACAAGCTATTGCAGATGCAGCGCATAGGATCAATCCCGGTGTCATTGTGTTGTGTCATGGAGTCCCAGTTTGGAATAATGTACTGGAATATGCAGGTCCAATATCCGGTCCAAAAGAGGCAGAATTTATATTGAAGAGAACCAAAGGAGTTCATGGGTTTTATGGGGCTTCAAGTATGGAAAGACTTCCAGTGGAGCAGGCTATTACAAATACAGTCAAAGAGTACAAGTCAATTTCTTTTCATTAA
>Glyma02g06040.1 sequence type=predicted peptide gene model=Glyma02g06040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHHHNNSTTLRVFCVGTLDTKLHELLFLSESLRSNLNRFSSSKVEVVVVDVSAGTNAPESLQDLAFVSRNDVVSSYNSGSGEALSLPEDRGKAVAVMTQALEQFLKKSHEDQSLVGVIGVGGSGGTSLLSSPFASLPIGIPKVIVSTVASGQTEPYVGTSDLVLFPSVVDVAGINRVSRLILSNAAAAFAGMVVGRVQSLQESSRAEDKPTVGITMFGVTTPCVNAVRDRLHEEGYETLVFHATGVGGRAMENLVREGFIQGVFDITTTEVADYIVGGVMACESSRFDAIIESKVPLVLSVGALDMVSLMRTTVDENRKFADFIANKLKNSSSKICVCLPEKGVSALDAPGKPFYDPEATSTLLRELQNLIPTNDDRQVKVYPHHINDLEFSNALVDAFLEINEKTSKGSTHQQVASPESVEQFHEDNVSNASSFGTILYTPNEFPEARTETLEKTQLILQQLLHQIHKGIPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAVVLDMANEVLPVVKKVPVLAGVCATDPFRRMDYFLKQVESTGFSGVQNFPTVGLFDGNFRQNLEETGMGYSLEVEMIQKAHKMGLLTTPYAFNQYEAIEMAKVGADIIVAHMGLTTTGSIGAKTAVSLEESVVRVQAIADAAHRINPGVIVLCHGVPVWNNVLEYAGPISGPKEAEFILKRTKGVHGFYGASSMERLPVEQAITNTVKEYKSISFH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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