SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G48670 | AT | Annotation by Michelle Graham. TAIR10: XH/XS domain-containing protein | chr3:18031240-18033615 FORWARD LENGTH=647 | SoyBase | E_val: 4.00E-122 | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR21596 | Panther | RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED | JGI | ISS | |
| PTHR21596:SF3 | Panther | TRANSCRIPTION FACTOR X1-LIKE | JGI | ISS | |
| PF03468 | PFAM | XS domain | JGI | ISS | |
| PF03469 | PFAM | XH domain | JGI | ISS | |
| UniRef100_G7KBR6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor X1-like protein n=1 Tax=Medicago truncatula RepID=G7KBR6_MEDTR | SoyBase | E_val: 2.00E-152 | ISS |
| UniRef100_UPI0002337061 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337061 related cluster n=1 Tax=unknown RepID=UPI0002337061 | SoyBase | E_val: 0 | ISS |
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Glyma02g06000 not represented in the dataset |
Glyma02g06000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g053400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g06000.2 sequence type=CDS gene model=Glyma02g06000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTTGGCCATTTGAAAGAGCATATGAATTAGATCATCATGCAAAGAAGGACTGGTTTGTTGATTCTGGGCAGAAGTCTGGCCTTTATGCGTGGGTTGCCCGAGCAGATGACTACAAAGTGAACAATATCTATGGAGAACAACTGCAAAAGATGGGCGATCTCAAAACCATACCTGAGCGTATGGAAGAAGAAGCTAGGAAGCAGGATATACTTGTCTCCAGTTTGACTAGCATTATCGAAGTCAAGAACCAGCACTTAAAAGAGATTGAAGTGAGATGTCATGAGACTACGAACAAAATGAACCTTGCTATGAATGAAAAAGATAAACTCATTCAAACTTATAATGAAGGCTTGTGGAAGGCTTGTTTAAAACTGCTGGCATTTTTATTGGATTTGCATAATGCAACAAAAAATAGCTCTCTTCAGATGGCTGCTCTGGAGCAAAAGAAAGCTGATGAAAATGTTATGAAACTGGCTAAGATCAACAGGTGTGTGAAGCAAAAAGAACAACTCCATGCTAAAATCATTCAGCTTCAAAAACAACTTGATAAGAAACAAGAGCTGGAGTTGGAGATTCAGCAATTAAAAGGAACATTAAATGTGTTGAAGCACATGGAAGATGATGAAGATGCAGAAGTTCTGAAGAAGGTAGATACTTTACAAAAGGATTTAAGAGACAAGGAGCAGTCACTTGAAGACTTAGTAGATGCATTGAACCAAGCACTTATCGTTAAAGAGCGTGAGAGTAATGATAAGCTGCAGGAAGCTCGAAAAGCATTGGTTGATGGTATGAAAGAGCTATCATCTCATGGCAATATTCGCTTGAAGAGAATGGGAGAACTTGACACTATACCATTCCATGACGCAATGAAGAAAAGATATAATGAAGAGGAAGCTGAAGAGAGAGCTTCAGAACTGTGCTCATTGTGGGAAGAGTATCTAAAGAATCCTGATTGCCATCCATTCAAAGTTACCATGGTTGAAGGGAAAGAAAAAGCAATTGTTAGAGATGATGATGAAATGCTGAATGAGTTAAAAAATGACTTGGGTGAAGGGGCATATAAAGCAGTGGTACAGGCTTTGTCAGAGGTAAATGAACATAATCCTAGTGGGCGATACTTAACCTCAGTAGTATGGAACTATAAAGAGGGAAGGAGAGCATCTCTGAAAGAAGTACAATTTCTGTTGAATCATTGGAAAGTTCTCAAACGAAAGAGGGGAATGGTGTGA
>Glyma02g06000.2 sequence type=predicted peptide gene model=Glyma02g06000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRWPFERAYELDHHAKKDWFVDSGQKSGLYAWVARADDYKVNNIYGEQLQKMGDLKTIPERMEEEARKQDILVSSLTSIIEVKNQHLKEIEVRCHETTNKMNLAMNEKDKLIQTYNEGLWKACLKLLAFLLDLHNATKNSSLQMAALEQKKADENVMKLAKINRCVKQKEQLHAKIIQLQKQLDKKQELELEIQQLKGTLNVLKHMEDDEDAEVLKKVDTLQKDLRDKEQSLEDLVDALNQALIVKERESNDKLQEARKALVDGMKELSSHGNIRLKRMGELDTIPFHDAMKKRYNEEEAEERASELCSLWEEYLKNPDCHPFKVTMVEGKEKAIVRDDDEMLNELKNDLGEGAYKAVVQALSEVNEHNPSGRYLTSVVWNYKEGRRASLKEVQFLLNHWKVLKRKRGMV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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