SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G26750 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme E2C-binding protein (InterPro:IPR019193); Has 26 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9840139-9841719 REVERSE LENGTH=526 | SoyBase | E_val: 5.00E-137 | ISS |
| GO:0006661 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF09814 | PFAM | Uncharacterized conserved protein (DUF2351) | JGI | ISS | |
| UniRef100_G7LDV4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CCP n=1 Tax=Medicago truncatula RepID=G7LDV4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JCL8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JCL8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g05960 not represented in the dataset |
Glyma02g05960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g053000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g05960.1 sequence type=CDS gene model=Glyma02g05960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAATGTGCAATGGCGCTTCCAAATTTTCAGCGAAGAAGCAAACCAAAGAGCAAGCATTAGAATGTGCAGCGACAGCGAACAACAAGGATGGCGTTACACATGGGAAGCACAGTCCCACATCCCAACGCTGCGTTTAACGCTCTTCCCTAACGACAAAACCCTAAACCCTTCTCTCCAATGCAAAGACCTCGCCGTCGATCTTCACTCCTCCCACTCCTTCCTCACTCTCACAGCCTCCTTTCTCTCCCTTAGGGTTCCGCTCCCCGCCGTCTTGGTCGATGGCGACTCTCCGGTCGCTTTCCGGCCTCTCTCCGACCACATCGAGGTCAAGCTCCTCCTCCTCCTCCCCGTCGACCACCCCATCCTCTCCGCCCTCGACCTCTCCCAAACCCCGCCGCCGGACCCTCTCGATTCACAATCCGATGTGAAAATTTTGTCTTCTGCAGGAGAAGTTGACTTCTACTGCAGAACTTGTGCCTTCAAGTTGACCAGAATTCCTCTCAGGAATTTTGTTGAAATGCCATCGGTGAATTGGAGAGAGGTGGCGGACAATTGGTTTGGAGCTTGCTGTTGTTCGTTTGGAGGGATAAGTGAGAAGATGGTGATGAGATATGTGAGTTCTTATATGTGCAGGCCGGGGGTATGTCTAGTAAGTTCTGCTTCTGTCACTCTTTGCAAGGATGATCTTGTGGAATGTAATTTTCTTGAAGGGTGTGGAGAGCAAGAATGTAGTACTGTAACAGAAGTCTCCAGAGATGATGGTGTTGTCAAAGGCATGCGAAACTGTGAATTGAATGATGAAAGAACTTCAACTTGCAGTGACTATGGTGAAGTGACCCATGCTTTTGATAGCAATTCTAGGCTTGTACATCCTGAGGATGAGAAGCTTTCTGTGAATTTGAGGTGTGAAGTTGCGAAGAGTAAACCTGGTTGTGGTGACTTCCCTGATTCATGTCCAGATTTGAATCATGCCGAAGATGTGACCCAAACTCCTAGTTGTTGTGCTCATTTGACAAGCAATGTTGGGCATGGAGACAGTGAACACAATTTATGTGGAACTGCTGGAAAGAAAGGGATGCCAACAGAGACTGTGGAAATTCTGGGAAATCAGAAGTCTTTCCTCAACGGTTATCTTGAAGATGTTTTCATGGCTAGATTATCAAATCTTTCTAAGGATATTGATTGGCGTGAATTTACGTGCCCTCAATGCACGTCTCTCCTTGGAGCCTACCCATGTCGTGAGGGACAGACACCTGTAGATGGGGGAGTACGATTTTTCAAATGTTATATTTCAACTTGTGTGCAAGTTGGAGGATCAGGGGATATGTTCAGTAAATATACAATGGGCAAAATGTTTGCAAATCAGTTGATGGAGTGTGCAAATGATGAATCATCATTTCGGTTTGTCATTAGAGATCTGACAACCAAATCCCCCGTCCTGCAAATCATTCTCTTAAATCCAGATACTTGGTCATGTTCTGGGAATTGTTCTAGTTTAGAAGACAAAGACCCAATTGCTAAATTAAAGTTACAGCCCATAATCAAAGTGCTTTTTTCTGACTGCCACAATGCAACAGAATCTCAATCAAGGTTGATAGAGGAATGGGCAACAAAGAATTCGGCTGAAGACATTTTCATGTTGACTCGTCAAACACAAGAATTGGTGGGGTTGTTCATATCAGCAAAAGATTTATATCCACCTTGTTGTGCTTCCCTTCAAGGTTTAATTTTGTCATCTTTGCAACTGTAG
>Glyma02g05960.1 sequence type=predicted peptide gene model=Glyma02g05960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANVQWRFQIFSEEANQRASIRMCSDSEQQGWRYTWEAQSHIPTLRLTLFPNDKTLNPSLQCKDLAVDLHSSHSFLTLTASFLSLRVPLPAVLVDGDSPVAFRPLSDHIEVKLLLLLPVDHPILSALDLSQTPPPDPLDSQSDVKILSSAGEVDFYCRTCAFKLTRIPLRNFVEMPSVNWREVADNWFGACCCSFGGISEKMVMRYVSSYMCRPGVCLVSSASVTLCKDDLVECNFLEGCGEQECSTVTEVSRDDGVVKGMRNCELNDERTSTCSDYGEVTHAFDSNSRLVHPEDEKLSVNLRCEVAKSKPGCGDFPDSCPDLNHAEDVTQTPSCCAHLTSNVGHGDSEHNLCGTAGKKGMPTETVEILGNQKSFLNGYLEDVFMARLSNLSKDIDWREFTCPQCTSLLGAYPCREGQTPVDGGVRFFKCYISTCVQVGGSGDMFSKYTMGKMFANQLMECANDESSFRFVIRDLTTKSPVLQIILLNPDTWSCSGNCSSLEDKDPIAKLKLQPIIKVLFSDCHNATESQSRLIEEWATKNSAEDIFMLTRQTQELVGLFISAKDLYPPCCASLQGLILSSLQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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