SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51070 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:18969068-18972291 FORWARD LENGTH=895 | SoyBase | E_val: 0 | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| KOG4055 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR10108 | Panther | METHYLTRANSFERASE | JGI | ISS | |
| PTHR10108:SF55 | Panther | PUTATIVE EARLY-RESPONSIVE TO DEHYDRATION STRESS PR | JGI | ISS | |
| PF03141 | PFAM | Putative methyltransferase | JGI | ISS | |
| UniRef100_G7KG99 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin-like protein n=1 Tax=Medicago truncatula RepID=G7KG99_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233705C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233705C related cluster n=1 Tax=unknown RepID=UPI000233705C | SoyBase | E_val: 0 | ISS |
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Glyma02g05840 not represented in the dataset |
Glyma02g05840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g052000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g05840.1 sequence type=CDS gene model=Glyma02g05840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACAAGCTACCAAGTCACGCAACAGCAGGAGGCCATCATCATCTTCCTCTTACACATCAACCCTAACAACCCTAATCTTCATCGCACTATGCGTTTTGGGCTTATGGATGCTAACCTCCAACACCGTAGTCACACCCAAAACACGCACTGCCATTGATGATAATATCTCCGAAACCACCAACACCGACCTCACCCAAGACACCACCGCCACAACCACAACAACAAACAACATCCCCGATGATTTTGCTGAATCCATCACAACCATCTCCCAAGACCTGCCACGTGAGACCGCCACAAATATACCACATGAAATCCACACCAAAATTCAAGACCAAAAGGACGCTACGGTGTTCGGCGACAACCCCGGAAACCTCCCCGACGATGCCATAAAGAATGATCTCAAGAAAGAAACTTCCATTATTGCGAACGAAGCTACTGGTTCCGACAGCGATCAGAAAGCGAACGAGAGCGAGAAAGAATCGCAAAACAACATCATCATAGCTCAAGATGAAAAAGAAAACCTAAACTCAAAACAAAACACAGAACCTGAGATTGCAAATGTGAGTGAGAATATTCAAGAAGAGGGCACAGGAGGAGGAGGTAAGAGCAACAACAACGACGATGACGCGAACGTGCAGCAACTGAGAGAAGACAAAGGTGAGGCAGTGGCGGAGAGAGAGCAAAAGGAAAAAGAGGAGAATGAGAAGAGGAAGAAGAACAATAGAAAGAAATCAAACAAGGGTTTGAAGAAGGAGGGGTCATCAACAGAATCGAATGATGATGAGTCGACACAGCGGGGTGAGAAAAAGGGATCATCAACTGAATCGAATGATGATGAGTCGACACAGCAGGGTGAGAAAAAGGGATCATCATCACAGAATGATGAGGAATCATCATCATCAGAAGTGATGCAATTGCAGGATAATTTGAAGTGGAGTTTGTGCAATGTCACGGCTGGTATGGATTACATACCGTGTTTGGATAATGACAAGTATTTGAAAACTTCGCGCAGAAAGCACTACGAGCATAGAGAGAGGCACTGCCCCGAGGATGCTCCTACGTGCCTGGTGCCACTTCCCAAAGGTTACAAAACACCAATACAGTGGCCCAGCAGCAGAGATAAGATATGGTACCACAACATACCACACACTTTGCTAGCAGACGTGAAGGGACACCAGAACTGGGTGAAGTTAACGGGTGAATTCTTGACATTCCCGGGAGGTGGCACCCAGTTCATTCATGGCGCTCTCCACTACATTGATTTTCTTCAACAGGCTGAACCAGGTATTGCATGGGGAAAGCACACTAGGGTGATTTTGGATGTTGGGTGTGGGGTAGGTAGTTTAGGAGGTTACCTATTTGAAAGAGATGTTATTGCTATGTCTTTTGCACCCAAAGATGAGCATGAAGCACAAGTGCAATTTGCCCTAGAGAGAGGGATACCAGCCATATCTGCTGTCATGGGTACTCAAAGGTTGCAATTCCCCAGCGAGGTCTTTGATCTTATTCATTGTGCTCGCTGTCGTGTACCTTGGCATGAAGATGGTGGCTTGTTGCTTTTGGAATTGAATCGCCTCCTTAGACCAGGGGGTTATTTTGTGTGGTGTGCTACACCTGTGTACCAGACAATTGAAGAAGATGCTGAGATATGGAAGCAAATGAAGGCATTAACCAAGTCCATGTGTTGGGAACTCGTGACCATAAAAAAGGATGCATTGAATCAAGTTGGTGCTGCCTTCTACCGCAAACCCACTTCCAACGAATGCTACGAGCAAAGGGAGCAAAACCAACCTCCAATGTGCAAAACTGATGATGATCCAAATGCAGCATGGTATGTTCCTCTACAGGCGTGCATGCACAAGTTGCCGACTGACAAGGACGAGAGAGGAACTAGATGGCCTGAACCTTGGCCTCGTAGACTGGAAAAAGCCCCATATTGGTTAAACAACTTGCAGGGTGGAAAACAAGCTTCTCATGATTTTGCAACAGACAATGAACGTTGGAAAAACGTTGTAGATGAGTTGAGTAACGTTGGGGTTTCTTGGTCTAACGTTAGAAATATCATGGACATGCGAGCTACTTATGGAGGATTTGCAGCAGCTCTGAAGGATCTTCCTGTTTGGGTATTCAATGTGGTGAACACAGATGCTCCTGACACACTTGCTGTCATATATGAACGGGGTCTCATTGGAATATACCATGATTGGTGTGAATCCTTTAGTACCTATCCACGAACTTATGATCTACTACATGCTGATCATCTTTTCTCAATTCTAAAGAATAGGTGCAATCTTGTTCCTGTTGTAACAGAGATTGATAGAATAGTAAGACCAGGAGGTAATTTGATAGTCCGTGATGAATCTAGTGTCATTGGAGAGGTGGAGGCTTTGTTGAAATCTCTGCATTGGGAAATAACCTCCACAAATCTAGAGGGATTGCTCTGTGGCAAGAAAGGGATGTGGCGACCTAGCTCTTGA
>Glyma02g05840.1 sequence type=predicted peptide gene model=Glyma02g05840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQATKSRNSRRPSSSSSYTSTLTTLIFIALCVLGLWMLTSNTVVTPKTRTAIDDNISETTNTDLTQDTTATTTTTNNIPDDFAESITTISQDLPRETATNIPHEIHTKIQDQKDATVFGDNPGNLPDDAIKNDLKKETSIIANEATGSDSDQKANESEKESQNNIIIAQDEKENLNSKQNTEPEIANVSENIQEEGTGGGGKSNNNDDDANVQQLREDKGEAVAEREQKEKEENEKRKKNNRKKSNKGLKKEGSSTESNDDESTQRGEKKGSSTESNDDESTQQGEKKGSSSQNDEESSSSEVMQLQDNLKWSLCNVTAGMDYIPCLDNDKYLKTSRRKHYEHRERHCPEDAPTCLVPLPKGYKTPIQWPSSRDKIWYHNIPHTLLADVKGHQNWVKLTGEFLTFPGGGTQFIHGALHYIDFLQQAEPGIAWGKHTRVILDVGCGVGSLGGYLFERDVIAMSFAPKDEHEAQVQFALERGIPAISAVMGTQRLQFPSEVFDLIHCARCRVPWHEDGGLLLLELNRLLRPGGYFVWCATPVYQTIEEDAEIWKQMKALTKSMCWELVTIKKDALNQVGAAFYRKPTSNECYEQREQNQPPMCKTDDDPNAAWYVPLQACMHKLPTDKDERGTRWPEPWPRRLEKAPYWLNNLQGGKQASHDFATDNERWKNVVDELSNVGVSWSNVRNIMDMRATYGGFAAALKDLPVWVFNVVNTDAPDTLAVIYERGLIGIYHDWCESFSTYPRTYDLLHADHLFSILKNRCNLVPVVTEIDRIVRPGGNLIVRDESSVIGEVEALLKSLHWEITSTNLEGLLCGKKGMWRPSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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