Glyma02g05670 - SoyBase

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Report for Sequence Feature Glyma02g05670

Feature Type:	gene_model
Chromosome:	Gm02
Start:	4544362
stop:	4547694
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g05670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51140	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3353) \| chr3:18998182-18999437 FORWARD LENGTH=278	SoyBase	E_val: 5.00E-118	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006399	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009073	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009706	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
PF11833	PFAM	Protein of unknown function (DUF3353)	JGI		ISS
UniRef100_I1JCJ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JCJ8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FN50	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g23040/MYJ24_3 n=1 Tax=Arabidopsis thaliana RepID=Q9FN50_ARATH	SoyBase	E_val: 3.00E-46	ISS

Expression Patterns of Glyma02g05670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g05670 not represented in the dataset	Glyma02g05670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g05670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g050600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g05670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g05670

Limit To All Plant Sequences

>Glyma02g05670.5   sequence type=transcript   gene model=Glyma02g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGGGCATGAGATGAGATGGCAAATGAAATGATTTTGTCCTTATTAGTCATTCATAAAATCGGGTGGAGCAGCTAGGTTTTGGTGTCCGCCTAAGCCCCTTCTTCTCGCTCGGTACACTCTTATTGCTATCCGCTGTTCACACCCTCCCTCTCACATGTCAAACCTCAAGCTACCCATCTCCCTCTGAAACACTTTTTCTCCCCTTTCCTTTTTTTACACCTTTCACTGTGTAAATAGGTAGGTCATATTGCCAGAGGATTTTGGCTATAATGACTGCATCTGGGTTGAGTGGTTGTCCCACAAGATGTCCACAGCTACCTTTTCATCCCATGGGATCACGCCATGCCCGGGTTATGGCCTTCTCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAGAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTCAAAAGTGCCATGGATGCTTCATATGGTGATATGTCAAATGATTCTGCTGCTGTTTTTCCAAGAATTAATGTGAGGGACCCATATAAACGACTTGGAATAAGCAAGGAAGCTTCTGAAGATGAAATTCAAGGAGCAAGGAACTTCCTGATTCAAAAATATGCAGGACACAAGCCAAGTGTGGATGCTATTGAGTCAGCACATGACAAAATAATCATGCAAAAGTTCTATGAACGGAAAAACCCAAAAATTGACATTAAGAAAAAAATGAGGGAAGTCAATCAATCCAAATTTGTGCAGGCTGTCAGAGGCAGATTTCAAACTCCATCTACAAAATTCATTATAAAAACTTCAATAGCATTCTTGGTACTTGGAGTTTTGACTGTCCTCTTTCCAACTGAAGAAGGGCCAACTCTTCAGGTAGCAATATCTCTGATCGCCACAATATATTTTATCCATGAACGGCTGAAGAGCAACATACGAGCTTCGCTATATGGGGTTGGAGCATTTGGTATTTCGTGGCTGTTGGGAACCTTCTTGATGGTGTCAGTAATTCCTCCTATTACCATACTTAAGGGACCAAGGGCATTTGAAGTGATCTCATCACTGATAACATATGTTCTATTATGGGTTTCATCGACCTATCTTAGGTGAAGAGGGTTTTAAAGCCGAAGACCAGTTTTTGCAGAAGAAGTTCACGAAATTTTATGGCCGACCTTGTTTAGATGTCAAATTATAGCTTAAAGGAGAAAAAAAATGACATACATTATTTTGTTGAATTAACAGTTGTTTTGTCTTTTTAGATTAAATATTTGAATTAGCAAACGTACTGGAATGTTTTAGAAGCGGAAATGAATGTGTTTTTTGTTCAGTTTGGATATGAAAGTTTTGGCTTTCAAATTTTACATATATCCGTTTCAAAGAGATCTGTCTCCTTAAATGAGTCTATGTAACTTGATTCGAGTTAGTTGTGAC

>Glyma02g05670.6   sequence type=transcript   gene model=Glyma02g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGGGCATGAGATGAGATGGCAAATGAAATGATTTTGTCCTTATTAGTCATTCATAAAATCGGGTGGAGCAGCTAGGTTTTGGTGTCCGCCTAAGCCCCTTCTTCTCGCTCGGTACACTCTTATTGCTATCCGCTGTTCACACCCTCCCTCTCACATGTCAAACCTCAAGCTACCCATCTCCCTCTGAAACACTTTTTCTCCCCTTTCCTTTTTTTACACCTTTCACTGGTAGGTCATATTGCCAGAGGATTTTGGCTATAATGACTGCATCTGGGTTGAGTGGTTGTCCCACAAGATGTCCACAGCTACCTTTTCATCCCATGGGATCACGCCATGCCCGGGTTATGGCCTTCTCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAGAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTCAAAAGTGCCATGGATGCTTCATATGGTGATATGTCAAATGATTCTGCTGCTGTTTTTCCAAGAATTAATGTGAGGGACCCATATAAACGACTTGGAATAAGCAAGGAAGCTTCTGAAGATGAAATTCAAGGAGCAAGGAACTTCCTGATTCAAAAATATGCAGGACACAAGCCAAGTGTGGATGCTATTGAGTCAGCACATGACAAAATAATCATGCAAAAGTTCTATGAACGGAAAAACCCAAAAATTGACATTAAGAAAAAAATGAGGGAAGTCAATCAATCCAAATTTGTGCAGGCTGTCAGAGGCAGATTTCAAACTCCATCTACAAAATTCATTATAAAAACTTCAATAGCATTCTTGGTACTTGGAGTTTTGACTGTCCTCTTTCCAACTGAAGAAGGGCCAACTCTTCAGGTAGCAATATCTCTGATCGCCACAATATATTTTATCCATGAACGGCTGAAGAGCAACATACGAGCTTCGCTATATGGGGTTGGAGCATTTGGTATTTCGTGGCTGTTGGGAACCTTCTTGATGGTGTCAGTAATTCCTCCTATTACCATACTTAAGGGACCAAGGGCATTTGAAGTGATCTCATCACTGATAACATATGTTCTATTATGGGTTTCATCGACCTATCTTAGGTGAAGAGGGTTTTAAAGCCGAAGACCAGTTTTTGCAGAAGAAGTTCACGAAATTTTATGGCCGACCTTGTTTAGATGTCAAATTATAGCTTAAAGGAGAAAAAAAATGACATACATTATTTTGTTGAATTAACAGTTGTTTTGTCTTTTTAGATTAAATATTTGAATTAGCAAACGTACTGGAATGTTTTAGAAGCGGAAATGAATGTGTTTTTTGTTCAGTTTGGATATGAAAGTTTTGGCTTTCAAATTTTACATATATCCGTTTCAAAGAGATCTGTCTCCTTAAATGAGTCTATGTAACTTGATTCGAGTTAGTTGTGAC

Coding sequences of Glyma02g05670

Limit To All Plant Sequences

>Glyma02g05670.4   sequence type=CDS   gene model=Glyma02g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGCATCTGGGTTGAGTGGTTGTCCCACAAGATGTCCACAGCTACCTTTTCATCCCATGGGATCACGCCATGCCCGGGTTATGGCCTTCTCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAGAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTCAAAAGTGCCATGGATGCTTCATATGGTGATATGTCAAATGATTCTGCTGCTGTTTTTCCAAGAATTAATGTGAGGGACCCATATAAACGACTTGGAATAAGCAAGGAAGCTTCTGAAGATGAAATTCAAGGAGCAAGGAACTTCCTGATTCAAAAATATGCAGGACACAAGCCAAGTGTGGATGCTATTGAGTCAGCACATGACAAAATAATCATGCAAAAGTTCTATGAACGGAAAAACCCAAAAATTGACATTAAGAAAAAAATGAGGGAAGTCAATCAATCCAAATTTGTGCAGGCTGTCAGAGGCAGATTTCAAACTCCATCTACAAAATTCATTATAAAAACTTCAATAGCATTCTTGGTACTTGGAGTTTTGACTGTCCTCTTTCCAACTGAAGAAGGGCCAACTCTTCAGGTAGCAATATCTCTGATCGCCACAATATATTTTATCCATGAACGGCTGAAGAGCAACATACGAGCTTCGCTATATGGGGTTGGAGCATTTGGTATTTCGTGGCTGTTGGGAACCTTCTTGATGGTGTCAGTAATTCCTCCTATTACCATACTTAAGGGACCAAGGGCATTTGAAGTGATCTCATCACTGATAACATATGTTCTATTATGGGTTTCATCGACCTATCTTAGGTGA

>Glyma02g05670.5   sequence type=CDS   gene model=Glyma02g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGCATCTGGGTTGAGTGGTTGTCCCACAAGATGTCCACAGCTACCTTTTCATCCCATGGGATCACGCCATGCCCGGGTTATGGCCTTCTCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAGAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTCAAAAGTGCCATGGATGCTTCATATGGTGATATGTCAAATGATTCTGCTGCTGTTTTTCCAAGAATTAATGTGAGGGACCCATATAAACGACTTGGAATAAGCAAGGAAGCTTCTGAAGATGAAATTCAAGGAGCAAGGAACTTCCTGATTCAAAAATATGCAGGACACAAGCCAAGTGTGGATGCTATTGAGTCAGCACATGACAAAATAATCATGCAAAAGTTCTATGAACGGAAAAACCCAAAAATTGACATTAAGAAAAAAATGAGGGAAGTCAATCAATCCAAATTTGTGCAGGCTGTCAGAGGCAGATTTCAAACTCCATCTACAAAATTCATTATAAAAACTTCAATAGCATTCTTGGTACTTGGAGTTTTGACTGTCCTCTTTCCAACTGAAGAAGGGCCAACTCTTCAGGTAGCAATATCTCTGATCGCCACAATATATTTTATCCATGAACGGCTGAAGAGCAACATACGAGCTTCGCTATATGGGGTTGGAGCATTTGGTATTTCGTGGCTGTTGGGAACCTTCTTGATGGTGTCAGTAATTCCTCCTATTACCATACTTAAGGGACCAAGGGCATTTGAAGTGATCTCATCACTGATAACATATGTTCTATTATGGGTTTCATCGACCTATCTTAGGTGA

>Glyma02g05670.6   sequence type=CDS   gene model=Glyma02g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGCATCTGGGTTGAGTGGTTGTCCCACAAGATGTCCACAGCTACCTTTTCATCCCATGGGATCACGCCATGCCCGGGTTATGGCCTTCTCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAGAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTCAAAAGTGCCATGGATGCTTCATATGGTGATATGTCAAATGATTCTGCTGCTGTTTTTCCAAGAATTAATGTGAGGGACCCATATAAACGACTTGGAATAAGCAAGGAAGCTTCTGAAGATGAAATTCAAGGAGCAAGGAACTTCCTGATTCAAAAATATGCAGGACACAAGCCAAGTGTGGATGCTATTGAGTCAGCACATGACAAAATAATCATGCAAAAGTTCTATGAACGGAAAAACCCAAAAATTGACATTAAGAAAAAAATGAGGGAAGTCAATCAATCCAAATTTGTGCAGGCTGTCAGAGGCAGATTTCAAACTCCATCTACAAAATTCATTATAAAAACTTCAATAGCATTCTTGGTACTTGGAGTTTTGACTGTCCTCTTTCCAACTGAAGAAGGGCCAACTCTTCAGGTAGCAATATCTCTGATCGCCACAATATATTTTATCCATGAACGGCTGAAGAGCAACATACGAGCTTCGCTATATGGGGTTGGAGCATTTGGTATTTCGTGGCTGTTGGGAACCTTCTTGATGGTGTCAGTAATTCCTCCTATTACCATACTTAAGGGACCAAGGGCATTTGAAGTGATCTCATCACTGATAACATATGTTCTATTATGGGTTTCATCGACCTATCTTAGGTGA

Predicted protein sequences of Glyma02g05670

Limit To All Plant Sequences

>Glyma02g05670.4   sequence type=predicted peptide   gene model=Glyma02g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTASGLSGCPTRCPQLPFHPMGSRHARVMAFSVAGRNKQGIAFRQVERTSFLSPILKCNRQLQLVKSAMDASYGDMSNDSAAVFPRINVRDPYKRLGISKEASEDEIQGARNFLIQKYAGHKPSVDAIESAHDKIIMQKFYERKNPKIDIKKKMREVNQSKFVQAVRGRFQTPSTKFIIKTSIAFLVLGVLTVLFPTEEGPTLQVAISLIATIYFIHERLKSNIRASLYGVGAFGISWLLGTFLMVSVIPPITILKGPRAFEVISSLITYVLLWVSSTYLR*

>Glyma02g05670.5   sequence type=predicted peptide   gene model=Glyma02g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTASGLSGCPTRCPQLPFHPMGSRHARVMAFSVAGRNKQGIAFRQVERTSFLSPILKCNRQLQLVKSAMDASYGDMSNDSAAVFPRINVRDPYKRLGISKEASEDEIQGARNFLIQKYAGHKPSVDAIESAHDKIIMQKFYERKNPKIDIKKKMREVNQSKFVQAVRGRFQTPSTKFIIKTSIAFLVLGVLTVLFPTEEGPTLQVAISLIATIYFIHERLKSNIRASLYGVGAFGISWLLGTFLMVSVIPPITILKGPRAFEVISSLITYVLLWVSSTYLR*

>Glyma02g05670.6   sequence type=predicted peptide   gene model=Glyma02g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTASGLSGCPTRCPQLPFHPMGSRHARVMAFSVAGRNKQGIAFRQVERTSFLSPILKCNRQLQLVKSAMDASYGDMSNDSAAVFPRINVRDPYKRLGISKEASEDEIQGARNFLIQKYAGHKPSVDAIESAHDKIIMQKFYERKNPKIDIKKKMREVNQSKFVQAVRGRFQTPSTKFIIKTSIAFLVLGVLTVLFPTEEGPTLQVAISLIATIYFIHERLKSNIRASLYGVGAFGISWLLGTFLMVSVIPPITILKGPRAFEVISSLITYVLLWVSSTYLR*

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