SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G44710 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:18432902-18436629 FORWARD LENGTH=809 | SoyBase | E_val: 5.00E-98 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG0117 | KOG | Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) | JGI | ISS | |
| PTHR24012 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24012:SF39 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_G7LCY9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Heterogeneous nuclear ribonucleoprotein Q n=1 Tax=Medicago truncatula RepID=G7LCY9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_G7LCY9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Heterogeneous nuclear ribonucleoprotein Q n=1 Tax=Medicago truncatula RepID=G7LCY9_MEDTR | SoyBase | E_val: 0 | ISS |
|
Glyma02g05595 not represented in the dataset |
Glyma02g05595 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g24161 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g049800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g05595.1 sequence type=CDS gene model=Glyma02g05595 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAACTCGAAACGCCGATTCCGCCTCCAAATCCGCAACCCCTAAGAAGACGCCGCCGAAGAAATCCCCTGCGGCCAAGCGCACCACCGCCACCAAAACCAGAGCCACCAAGAAGAACGAGCTCTCGCCCGCACCCGATTCCAACCCCGATCAATCTCCTCTGGAACAGAAATCGTTAGGCAGTGCTAGCAGCGCAAAATCTGTGAAAAAGAAGACTCCGGGGAGATCGAGAAGTAAAGCAATCAATACTCCGAATTCGGAAGAACAATGTGAGGCAGTAGCTGATGAAACTCCAATTGAAGATGATACCGAGGTAGCAGAGAAAGTGGAAGATGTTGGAGTGGTTGATGCAGATAATGTTGAGGGTGAGAAGGAGGGGGGAAAAGGTGTTGGTTCTGTTGGATTGTCTGATGAGACGGATCGTAAGTCGATGGAAGTGGATGAACTTGTTCAAAAGGTTTGTGAATCTGTGGGAAAGGAAAATGATGTAATGGAAGTTGAAGTAGCTGCTTGCTGGGATGCTTCTGTTTCTTTTAGGCGACCAGGGCGACCTATTGTGGATCTCAATATATCTGCGGATAATGAAGATTGTACTGGTGAAAAGGAGGGAGAGAAATGGAAGGAAGAGTTGAAAGATCAAGAGGGGGACAAAGGGAAGGAAGAGTTGAAAAAACAGGAAGGAGACAACGGGAAGGAAGAGTTGAAAGAACTGGAAGGAGAGAAAGGAGAGGAAGAGTTGAAAGAACTGGAAGGAGAAAAAGGTGAGGAAGAGTTGACAGAACTGGAAGGAGAGAAAGGAAATGTTGAATTGAAAGAACAGAAAGGAGACAAAGGAAAGGAAAAGTTGAAAGAGCAGGAGCCAGAGAAAGCAAAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACTCTGAGTCTTTTGGTGTAGAAGGTGAAGCCCAGATGCAAAAAGAAGATGCTAATCCTATTAAAGATGGCGGTGAAGGACCAAAGATTGGTGAAAATTCAGATCTTGGAGAACAAGGGAAGGTGGAGCTTGTTGAAGATCCAGAAGAAAACCCTGAAGAAGATCCAGAGGAACCTCCAGAAGAAACTTCGGCATTGGAGGAGGAGCATAGGGAATTGGAGGCTATTGCAAATCAGAGAAAGATTAAAAAAGAACACGAGATTTTTGTTGGTGGATTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATCGGGGAGATAGTTGAAGTCAGATTGCATAAGAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTTCTGATAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGCAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACCAAAGAAGCTATTAAACAGAAGCTGAAGGATTATGGTATTGAAGGGGTTGAAAACATTATGCTTGTCCCAGATGTTCAGCATGAGGGCTTGAGCTGGGGCTTTGCATTCCTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCCGATGTTATGTTTGGCCATGCTGAGCGAACAGCTAAGGTAGCCTTTGCTGAACCCATACGTGAACCAGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACATTGGGACGAAGATCATGTGAGGGAGCTGTTTAAATCTTATGGTGAAGTTGTAAGAATTGTGCTAGCACGGAATATGTCTTCAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGCGTAAATAAATCAGAATTGGGTGATGGGGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAATCCTCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCAAATAAGTCATGCTAGGAGTGGAGCCTTTTCAAGACCAGGAAGGGGGTTTGGGCGGGGAAGACAGCCCTTCAACAACAGGGGGAATTTCAACAGGAGCAGGAGTTTCTATCGTGGTGGGCACAGCCAAATTGGAAGAATGGGTTTTCAGGATGACCATGATTTTAGTATGCATCCAGATTTCCGTCAAAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGCAGGTAGCCGAGGTGCTGCATTTGCTGGACCATCTAGACCTTATCATGATAGAGCATGGTATGGTATTCCCGATGGAGGCCCTATTGAGCCTATTCCTCCAAGGAGGCCCTACTCCCCAGGTGGACAGTTTGACATGCCTTCTATGGGAAGGCATTTTGATGATCCATATCTGTATGATGACAATATGCATGGAATGAAACGTCCATTTTATATGACTGACCCTGAGCCTGATTACATGGGGCCTAATAGATTACGTCCTCGATTGGATTATGCAGATCCACCTATATTTCATGGAACTCATCACCATGATTCTTTTGGGGCTGGCAGCAGACAGTACCCTCCTGACTATTACGGTTCTGACTATGGTAGAGGTTCATATTTATCTTATTATGGGGGTGATGGCTCACATGGGCATGGATACTATTATTAG
>Glyma02g05595.1 sequence type=predicted peptide gene model=Glyma02g05595 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRTRNADSASKSATPKKTPPKKSPAAKRTTATKTRATKKNELSPAPDSNPDQSPLEQKSLGSASSAKSVKKKTPGRSRSKAINTPNSEEQCEAVADETPIEDDTEVAEKVEDVGVVDADNVEGEKEGGKGVGSVGLSDETDRKSMEVDELVQKVCESVGKENDVMEVEVAACWDASVSFRRPGRPIVDLNISADNEDCTGEKEGEKWKEELKDQEGDKGKEELKKQEGDNGKEELKELEGEKGEEELKELEGEKGEEELTELEGEKGNVELKEQKGDKGKEKLKEQEPEKAKGEETNLFGHEENSESFGVEGEAQMQKEDANPIKDGGEGPKIGENSDLGEQGKVELVEDPEENPEEDPEEPPEETSALEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFSDKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENIMLVPDVQHEGLSWGFAFLEFSCHADAMLAYKRLQKPDVMFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEVVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMCGGFQISHARSGAFSRPGRGFGRGRQPFNNRGNFNRSRSFYRGGHSQIGRMGFQDDHDFSMHPDFRQRQFGPQGAVRGGHYAGSRGAAFAGPSRPYHDRAWYGIPDGGPIEPIPPRRPYSPGGQFDMPSMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTHHHDSFGAGSRQYPPDYYGSDYGRGSYLSYYGGDGSHGHGYYY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
