Glyma02g05450 - SoyBase

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Report for Sequence Feature Glyma02g05450

Feature Type:	gene_model
Chromosome:	Gm02
Start:	4388742
stop:	4392353
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g05450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51240	AT	Annotation by Michelle Graham. TAIR10: flavanone 3-hydroxylase \| chr3:19025409-19026658 FORWARD LENGTH=358	SoyBase	E_val: 0	ISS
GO:0009718	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
GO:0045486	GO-mf	Annotation by Michelle Graham. GO Molecular Function: naringenin 3-dioxygenase activity	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_Q53B69	UniRef	Annotation by Michelle Graham. Best UniRef hit: Flavanone 3-hydroxylase n=1 Tax=Glycine max RepID=Q53B69_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q53B69	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Flavanone 3-hydroxylase n=1 Tax=Glycine max RepID=Q53B69_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma02g05450

Locus	Gene Symbol	Protein Name
	F3H1	flavanone 3-dioxygenase gene 1

Expression Patterns of Glyma02g05450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g05450 not represented in the dataset	Glyma02g05450 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g05450

Paralog	Evidence	Comments
Glyma16g23880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g05450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g048400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g05450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g05450

Limit To All Plant Sequences

>Glyma02g05450.2   sequence type=transcript   gene model=Glyma02g05450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCAAAGACAACAATGGCACCAACAGCCAAGACTCTGACTTACCTGGCCCAGGAGAAAACCCTAGAATCGAGCTTCGTTCGGGACGAGGAGGAGCGTCCCAAGGTTGCCTACAACGAATTCAGCGACGAGATCCCAGTGATTTCTCTTGCCGGAATCGACGAGGTGGATGGACGCAGAAGAGAGATTTGTGAGAAGATCGTGGAGGCTTGCGAGAATTGGGGTATATTCCAGGTTGTTGATCACGGTGTGGATCAACAACTCGTGGCCGAGATGACCCGTCTCGCCAAAGAGTTCTTTGCTTTGCCACCGGACGAGAAGCTTCGTTTTGATATGTCCGGCGCCAAAAAGGGTGGATTCATTGTCTCCAGCCATCTCCAAGACTGGAGAGAAATAGTGACATACTTTTCGTACCCAAAAAGAGAGAGGGACTATTCAAGGTGGCCAGACACGCCAGAAGGGTGGAGATCGGTGACTGAGGAATACAGCGACAAAGTAATGGGTCTAGCTTGCAAGCTCATGGAGGTGTTGTCCGAAGCAATGGGGTTAGAGAAAGAGGGTTTAAGCAAAGCATGTGTTGACATGGACCAGAAGGTGGTGGTTAATTACTACCCCAAATGCCCTCAACCTGACCTCACTCTTGGCCTGAAGCGCCACACGGATCCGGGCACTATCACCTTGCTGCTTCAGGACCAAGTGGGTGGACTTCAAGCCACCAGGGACAATGGCAAAACATGGATCACCGTTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACTTTTCAAAACCCAGCACCAAATGCAACTGTTTACCCTCTGAAGATAAGAGAAGGAGAGAAGCCTGTGATGGAGGAACCAATCACTTTTGCTGAAATGTACAGGAGGAAGATGAGCAAGGACATTGAGATTGCAAGGATGAAGAAGCTGGCTAAGGAAAAGCATTTGCAGGACCTTGAGAATGAAAAGCATTTGCAAGAACTTGATCAGAAGGCAAAACTTGAGGCCAAGCCTTTGAAGGAGATTCTTGCTTAATTAATAATAATTACATATGTATCATTTGCATGCCCCCTTGGTGTTTTTAGTATTTTTTAAGGGCCATGAATTAATAATAGTCCTTACCTTTGTGCTTTTGTACGTCTTATGATTTATCCTTTGTGGGGATATCATGTGTTGTGTTCAGTTGCCTATGTCTTATTAGCTAGCTGGCTCATCTATGTATACCTTATATTTGCCTCTATTATAAATGAAAATAAGTGGCACTGTCTTTATTATTGGCTGCATCCATGGTCTACCATCACAG

Coding sequences of Glyma02g05450

Limit To All Plant Sequences

>Glyma02g05450.1   sequence type=CDS   gene model=Glyma02g05450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCAACAGCCAAGACTCTGACTTACCTGGCCCAGGAGAAAACCCTAGAATCGAGCTTCGTTCGGGACGAGGAGGAGCGTCCCAAGGTTGCCTACAACGAATTCAGCGACGAGATCCCAGTGATTTCTCTTGCCGGAATCGACGAGGTGGATGGACGCAGAAGAGAGATTTGTGAGAAGATCGTGGAGGCTTGCGAGAATTGGGGTATATTCCAGGTTGTTGATCACGGTGTGGATCAACAACTCGTGGCCGAGATGACCCGTCTCGCCAAAGAGTTCTTTGCTTTGCCACCGGACGAGAAGCTTCGTTTTGATATGTCCGGCGCCAAAAAGGGTGGATTCATTGTCTCCAGCCATCTCCAAGGGGAATCGGTGCAGGACTGGAGAGAAATAGTGACATACTTTTCGTACCCAAAAAGAGAGAGGGACTATTCAAGGTGGCCAGACACGCCAGAAGGGTGGAGATCGGTGACTGAGGAATACAGCGACAAAGTAATGGGTCTAGCTTGCAAGCTCATGGAGGTGTTGTCCGAAGCAATGGGGTTAGAGAAAGAGGGTTTAAGCAAAGCATGTGTTGACATGGACCAGAAGGTGGTGGTTAATTACTACCCCAAATGCCCTCAACCTGACCTCACTCTTGGCCTGAAGCGCCACACGGATCCGGGCACTATCACCTTGCTGCTTCAGGACCAAGTGGGTGGACTTCAAGCCACCAGGGACAATGGCAAAACATGGATCACCGTTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACTTTTCAAAACCCAGCACCAAATGCAACTGTTTACCCTCTGAAGATAAGAGAAGGAGAGAAGCCTGTGATGGAGGAACCAATCACTTTTGCTGAAATGTACAGGAGGAAGATGAGCAAGGACATTGAGATTGCAAGGATGAAGAAGCTGGCTAAGGAAAAGCATTTGCAGGACCTTGAGAATGAAAAGCATTTGCAAGAACTTGATCAGAAGGCAAAACTTGAGGCCAAGCCTTTGAAGGAGATTCTTGCTTAA

>Glyma02g05450.2   sequence type=CDS   gene model=Glyma02g05450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCAACAGCCAAGACTCTGACTTACCTGGCCCAGGAGAAAACCCTAGAATCGAGCTTCGTTCGGGACGAGGAGGAGCGTCCCAAGGTTGCCTACAACGAATTCAGCGACGAGATCCCAGTGATTTCTCTTGCCGGAATCGACGAGGTGGATGGACGCAGAAGAGAGATTTGTGAGAAGATCGTGGAGGCTTGCGAGAATTGGGGTATATTCCAGGTTGTTGATCACGGTGTGGATCAACAACTCGTGGCCGAGATGACCCGTCTCGCCAAAGAGTTCTTTGCTTTGCCACCGGACGAGAAGCTTCGTTTTGATATGTCCGGCGCCAAAAAGGGTGGATTCATTGTCTCCAGCCATCTCCAAGACTGGAGAGAAATAGTGACATACTTTTCGTACCCAAAAAGAGAGAGGGACTATTCAAGGTGGCCAGACACGCCAGAAGGGTGGAGATCGGTGACTGAGGAATACAGCGACAAAGTAATGGGTCTAGCTTGCAAGCTCATGGAGGTGTTGTCCGAAGCAATGGGGTTAGAGAAAGAGGGTTTAAGCAAAGCATGTGTTGACATGGACCAGAAGGTGGTGGTTAATTACTACCCCAAATGCCCTCAACCTGACCTCACTCTTGGCCTGAAGCGCCACACGGATCCGGGCACTATCACCTTGCTGCTTCAGGACCAAGTGGGTGGACTTCAAGCCACCAGGGACAATGGCAAAACATGGATCACCGTTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACTTTTCAAAACCCAGCACCAAATGCAACTGTTTACCCTCTGAAGATAAGAGAAGGAGAGAAGCCTGTGATGGAGGAACCAATCACTTTTGCTGAAATGTACAGGAGGAAGATGAGCAAGGACATTGAGATTGCAAGGATGAAGAAGCTGGCTAAGGAAAAGCATTTGCAGGACCTTGAGAATGAAAAGCATTTGCAAGAACTTGATCAGAAGGCAAAACTTGAGGCCAAGCCTTTGAAGGAGATTCTTGCTTAA

Predicted protein sequences of Glyma02g05450

Limit To All Plant Sequences

>Glyma02g05450.1   sequence type=predicted peptide   gene model=Glyma02g05450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPTAKTLTYLAQEKTLESSFVRDEEERPKVAYNEFSDEIPVISLAGIDEVDGRRREICEKIVEACENWGIFQVVDHGVDQQLVAEMTRLAKEFFALPPDEKLRFDMSGAKKGGFIVSSHLQGESVQDWREIVTYFSYPKRERDYSRWPDTPEGWRSVTEEYSDKVMGLACKLMEVLSEAMGLEKEGLSKACVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDNGKTWITVQPVEAAFVVNLGDHAHYLSNGRFKNADHQAVVNSNHSRLSIATFQNPAPNATVYPLKIREGEKPVMEEPITFAEMYRRKMSKDIEIARMKKLAKEKHLQDLENEKHLQELDQKAKLEAKPLKEILA*

>Glyma02g05450.2   sequence type=predicted peptide   gene model=Glyma02g05450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPTAKTLTYLAQEKTLESSFVRDEEERPKVAYNEFSDEIPVISLAGIDEVDGRRREICEKIVEACENWGIFQVVDHGVDQQLVAEMTRLAKEFFALPPDEKLRFDMSGAKKGGFIVSSHLQDWREIVTYFSYPKRERDYSRWPDTPEGWRSVTEEYSDKVMGLACKLMEVLSEAMGLEKEGLSKACVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDNGKTWITVQPVEAAFVVNLGDHAHYLSNGRFKNADHQAVVNSNHSRLSIATFQNPAPNATVYPLKIREGEKPVMEEPITFAEMYRRKMSKDIEIARMKKLAKEKHLQDLENEKHLQELDQKAKLEAKPLKEILA*

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