SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36050 | AT | Annotation by Michelle Graham. TAIR10: endonuclease/exonuclease/phosphatase family protein | chr4:17052323-17055044 REVERSE LENGTH=610 | SoyBase | E_val: 0 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004518 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nuclease activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1294 | KOG | Apurinic/apyrimidinic endonuclease and related enzymes | JGI | ISS | |
| PTHR22748 | Panther | AP ENDONUCLEASE | JGI | ISS | |
| PF03372 | PFAM | Endonuclease/Exonuclease/phosphatase family | JGI | ISS | |
| PF06839 | PFAM | GRF zinc finger | JGI | ISS | |
| UniRef100_G7LC44 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-(Apurinic or apyrimidinic site) lyase n=1 Tax=Medicago truncatula RepID=G7LC44_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336F5D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336F5D related cluster n=1 Tax=unknown RepID=UPI0002336F5D | SoyBase | E_val: 0 | ISS |
|
Glyma02g05430 not represented in the dataset |
Glyma02g05430 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g23850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g048200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g05430.1 sequence type=CDS gene model=Glyma02g05430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGATAGTGAGTTACAACGTGAACGGTCTGAGACAGCGCATAGCGCAGTTCGGGTCTCTCCGGAACCTGCTAAATTCATTCGACGCCGACATCATTTGTTTTCAGGAGACGAAACTGCGGAGGCAGGAAGTCACAGCGGATTTGGTCATGGCTGACGGATACGAATCGTTCTTTTCATGCACCCGCACCTCCCAGAAGGGCCGAACCGGCTATTCCGGTGTCATTACATTTTGTCGTGTAAAGTCTGCATTTTCGAGTAATGAAGTGGTGTTGCCGCTGGCAGCAGAGGAAGGGTTTACTGGTCTTTTGGGAAACTCTCAAACTAGCAACGACAAATTGCCATTCTTGATGGAAGATCTTGAGGAATTTTCAAAAGATGAGCTTCTAAGTCTTGATAGTGAGGGGCGCTGCATAATCACAGATCACACTCACTTTGTTCTTTTCAATTTGTATGGGCCCCGAGCTGGAGGTGATGACACAGAAAGGATTCAGTTTAAACAAAAATTTTACAGGATATTACAGAAAAGATGGGAGTCTCTCCTGCATCAAGGAAGGAGAATATTTGTTGTTGGTGATCTCAATATTGCACCATTTGCAATTGATCGATGTGATGCCGGACCTGATTTTGAAAATAACGAGTTTAGAAAATGGTTCAAATCAATGTTAATTGAAAATGGGGGTCGATTTTCTGATGTCTTCAGAGCAAAACATCCTGATAGAAGGGAAGCATACACCTGTTGGTCACAAAATACAGGTGCTGAAGTATTTAACTTTGGGAGTAGAATTGACCATATTCTATTTGCTGGTTCATGCTTACATGAATTGGATGACCTGCAATGCCATAGTTTTATAAGATGCCATGTCAAGGAATGTGATATTCTGACACAGTATAAACGGTGTAAGCCAGAAAGCACACTGAGTGCCCATAGGTGGAAGGGAGGGCATAGCGTTAAACTGGAAGGATCTGATCATGCTCCAGTTTTAATGTCTTTACATGAAATTCCTGATGTCTCTCTGCACAGTACTCCTTCCTTATCTGCTAGATATGTTCCCATGGTTCACGGCATACAGCAAACTCTAGTGTCAGTGTTGATGAAAAGACAAGTTTCTGAACTAATGAAATCATGTGAGATGGCACAAGAAGACATTGCAATGGATGGTACTTGTGAGAGAGAAGAACCAGTGAACAGAGCTGGTTCATCCACAAGAAGTCCAAATGAATGTCATTTTCCTCCAAGCCAGGATTTTGAAGTTAGTAGCATTTTGAAACCAAACAAACTTTCTGGAGGTTCTTCTCAGGAGTCTGTTTCTAAATCAGGAAGTGAAAATAAAAAATCAACAACCAGGCAATGTAACAGATCCAACAAAAAAGCTAGAAATGGTCAATGGTCCCAGCTCTCACTTCGGTCATTTTTTCAGAAAAGTACAAATCTTGACAAAGGTAGTTCCATAAAAGAAGTAGTCAATGACTCATGTACTGATTACTCAAATAATAATCAGGCAGAACCCTCTCAACCAAGCCCTCGTTTACAGGAAATTCCAACAGTATGTGCTCATAATGGCAGTCCCAAGCAATATGAGTTGGATACTGATACATGTGATCCGGATTTAGCTGGACCAAATGGTAGTTCCACAAAAGAAGAAAAAAGTAATGTGGCTTCACTAGAGTGGCAACGAATAAAACAGTTGATGCAGAACAGTATACCTATTTGCAAGGGCCATAAGGAACCTTGTATTGCTCGGGTGGTGAAGAAACAAGGACCTAATTTTGGCCGCAGATTCTATGTTTGTGCCCGTGCTGAGGGCCCTGCATCTAATCCGGAAGCAAACTGCGGTTACTTCAAATGGGCTTCTTCAAAGTCTAGGAATAAATAA
>Glyma02g05430.1 sequence type=predicted peptide gene model=Glyma02g05430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKIVSYNVNGLRQRIAQFGSLRNLLNSFDADIICFQETKLRRQEVTADLVMADGYESFFSCTRTSQKGRTGYSGVITFCRVKSAFSSNEVVLPLAAEEGFTGLLGNSQTSNDKLPFLMEDLEEFSKDELLSLDSEGRCIITDHTHFVLFNLYGPRAGGDDTERIQFKQKFYRILQKRWESLLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEFRKWFKSMLIENGGRFSDVFRAKHPDRREAYTCWSQNTGAEVFNFGSRIDHILFAGSCLHELDDLQCHSFIRCHVKECDILTQYKRCKPESTLSAHRWKGGHSVKLEGSDHAPVLMSLHEIPDVSLHSTPSLSARYVPMVHGIQQTLVSVLMKRQVSELMKSCEMAQEDIAMDGTCEREEPVNRAGSSTRSPNECHFPPSQDFEVSSILKPNKLSGGSSQESVSKSGSENKKSTTRQCNRSNKKARNGQWSQLSLRSFFQKSTNLDKGSSIKEVVNDSCTDYSNNNQAEPSQPSPRLQEIPTVCAHNGSPKQYELDTDTCDPDLAGPNGSSTKEEKSNVASLEWQRIKQLMQNSIPICKGHKEPCIARVVKKQGPNFGRRFYVCARAEGPASNPEANCGYFKWASSKSRNK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
