SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66180 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:26448952-26450919 FORWARD LENGTH=395 | SoyBase | E_val: 0 | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| KOG2198 | KOG | tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily | JGI | ISS | |
| PTHR22807 | Panther | NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING | JGI | ISS | |
| PTHR22807:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01189 | PFAM | NOL1/NOP2/sun family | JGI | ISS | |
| UniRef100_G7LC16 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal RNA small subunit methyltransferase, putative n=1 Tax=Medicago truncatula RepID=G7LC16_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JCG2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCG2_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma02g05280 not represented in the dataset |
Glyma02g05280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g047100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g05280.1 sequence type=CDS gene model=Glyma02g05280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAAGAACACGCCGCAAAGGCGCCACTGCCGGACGCTTTCCTTCAGTTCCTGGAGACCAACGGGCTCGACCCTTCCATTTACACTGCTATTGATTCCACCCCACGATACATTCGGTTGAAACCCGGTTTCGAATCATGTATTGAAGAGGTTGAAGCAGAGGTGAAATGCAAACTCGAAAAATTAGAGTGGTTACCGGGATTTTACTCTCTTCCACCTCACGTTCAAATTGCTGGTTCTAGGGCATACCGAGAAGGGAAGATATATGGAATTGATGCAGCTTCTGGAGCTGCAGTTATGGCTTTAAATATATCACCTGGGGATCATGTTCTCGACCTGTGTGCTGCTCCTGGTGCCAAACTTTGTATGATTTTGGACCTTCTTGGTGATTCAGGCTCTGTGGCTGGAGTGGATGTTGCAAGGCATCGTTTGGCAGCGTGTAGGACAATGCTGCAGAAATATATGATTGGTGGTCGGTGCCGGCTTTTTGTTGCTGATGGAACAGCATTTTCAGTTATTCCTAGCGGATTTTGTTCTGACTGCAAATCATGTGAGTCTGGATTGGAAGGAAGAGTGGATGTGTTCAAGGAGTGGACATCTAGAAGACCATGGAAAGAGAGGAAAAAGGCAAATAAAAGTGGGACTGCACAATTGGTGTCTAGGTCTCAGCCTCCTGAGCTAATTTATTATGGACAACATTCTGGAGTTGTTGGTCTTACTAAAGGAGAATTATATAGGACTTTATCTGACAATGAGATTGCAAATCATGGCTATGACAAGGTCCTTGTGGATGCAGAGTGCACTCATGACGGTTCAGTTAAACATATTCAGAAGTTTGAAGATTGGGGCTGGGGAACTCTTCAGCGCCGTGTACTAGATGCTGAGAGGACTGATGACTTGCATACTCTTCAGTTGAATCTTCTCACCAATGGTTTCCGACTGCTAAAAGTTGGAGGGTCCCTCGTCTACAGCACTTGCAGCTTAACTATTGCACAAAATGAAGATGTGGTGGAACAATTCTTGAAGGAAAACGAAACTGCTGAGTTGACGGAGATAGATGCTGCCAGTGATTGGCCTTGCAAGGGTGGTCGCATACCGAAAACATGGCGATTTGACCCTTTAACATCACAAACCAGTGGACTATTTGTAGCAAAGTTCACAAAAGTTGTCATTTGA
>Glyma02g05280.1 sequence type=predicted peptide gene model=Glyma02g05280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEEHAAKAPLPDAFLQFLETNGLDPSIYTAIDSTPRYIRLKPGFESCIEEVEAEVKCKLEKLEWLPGFYSLPPHVQIAGSRAYREGKIYGIDAASGAAVMALNISPGDHVLDLCAAPGAKLCMILDLLGDSGSVAGVDVARHRLAACRTMLQKYMIGGRCRLFVADGTAFSVIPSGFCSDCKSCESGLEGRVDVFKEWTSRRPWKERKKANKSGTAQLVSRSQPPELIYYGQHSGVVGLTKGELYRTLSDNEIANHGYDKVLVDAECTHDGSVKHIQKFEDWGWGTLQRRVLDAERTDDLHTLQLNLLTNGFRLLKVGGSLVYSTCSLTIAQNEDVVEQFLKENETAELTEIDAASDWPCKGGRIPKTWRFDPLTSQTSGLFVAKFTKVVI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
